Gene detail

Detailed information of ayon_s0008.g294.t1 in Acropora yongei

Genomic Location: sc0000008_pilon:5049339...5053123
NR annotation: XP_029212905.2, uncharacterized protein LOC114976601 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ayon_s0008.g294.t1

AATGCACTGGTTTACTCTCATCAGAAGACAGTGCAAAGAGAGAGGGAACGAGCCATTAGAGACAAAATCAAGTGTTTAAGGAAAATGCTTCCATGGAATAACTTGAAAAACAATCGTCCATCAAGGAAAGACATTCTAGAAAGTGCAATAAGACACATCGTGCAACTACAAGAAGACATCCGAGAGGCATACCTCCAGAAAGGGCTGAGGTCAGAAGAATTGAAGAGTGCCCTGCAAGGTGACATGGTCTTAAATTTGGGCAACAGTCATCATCAAATCAATGAAGCATATTTGGCTGCAGGTGTGGAAAACAGTCTTCCTAGTACTCCAGAGCTCAAAGTTGATGCAGAAGATTTGTCCCTTACAATGGCATCTCCTGTCTCAGAGTTAAGCAGCCAGGGGTCAGAGATGTCAGATTCTGCACTCTCTGGTGGTTCAAGAACTGGAGAAAACACCAAACATATAAAGAGACCTATGAATGCATTCATGTTGTTCAGCAAGAACCATCGTACATTATTCAAGCAGTTGTACCCTGGAAGAGAAAATCGTAAGATTAGCACCCTCCTTGCTGAGAAATGGAGAGGGATGAAATCAGAAGAGAAAGAACCATACAGGCTGGAAGCTAAAGAGTTGATGAGACAAACAAAGGAGTCGCATCCAGATTTTAAGTACCGTGATGGCATCAAGAAAGCACCTCAGTCATCGGCCAATGGTGGCAGCACCAGGCAAACTAGTTTGGAACGTGGCTACAAGGTTGGTTCTCATAATCTCAGACAAAGAGGAGCAAATGCAAGAGATTTTAAGGCCACAAAAAGAGCTCAAGGCCAACAAGAAAAAACACAGAGCATCAAGATGAACAATGCAACAGCAACCCCAGCATTTGATGAAGTGCCTGCAGCTACTCTGGTAGAAAGCAAAACAGTTCAGATGCTTGCGACACCTAATACTTACCTACACCACTTAGACAATGACCACAATTATTTAATGCAAATCCTGACGTCAAATGAAGGTTGTAAGAGCCCAGTGGTTAAAGTCAATAATTTTATCAGTCATAGCAGGGCTCAAGGCTTTGTTTCATAATTTTGAAAAGTTCTAGTTTTTGTTAGCTACAACATTTGTAGACGATGGTTAATCGGCACATCTAAAACAcaggttgcaggtcaagtcagggcagggcaataggaagaataattcttctgccatggaaataatgagaaattaaataaattatggcagtacccataagtcctgtcatcacttgatttaccctctgagcacttggctaaaaaaccacagaCCTGACATGGCCTTTAATCTGTGTTTTAGACCCGCCGATGATTAATGTTGTTGCGTCACTAGCCTAAGCCAAATGCAACCAAAGTTTTGGCCAAGTTTATTGAAGATGTGACTCTTAACAATTGCCGCTGAATCAGTTTTGGTTGAATTTCATAAATTTTGTTGATAAGTTAACTATATAGCAACCAACAACAGTGTCATAGTTTACCCCAATTTTCACCAGCATAATACCCATGATACAGTATATGGGCATCATGGCTATCACTAACCCTAACCTTGTGATAGTGTTATACAAAGTGACTTGAATCTTATCTGCATGCAGCTGTATCAGCCACGTATGAAAAATTAGGATGGCTTGTTACAGCCATAACAAAAATTTGGAAGAAAAGATTGAAACGCTCTGGATAGGTCTGAATGTCAATTTTTTTTTTGTCTGGTTTGAAACAGCACTGCCAAACCCTAAGGGAACTGTTTGCACCAGAGACATTAAACTAGACACTAGTAACTTTTAAGTTGATGACATAAGAACTATTGTCATCCCAacagtgtgcttagttgcctcgcctcgcctttcaatgaagttgaccttgtttcaatagaaatctcactgctttcttacataaattccaactaattagcatgagaactgcatcattaacataaaagaagggaggtttctatcaaaacaatgtcaacttgagcctcactttcattgaaaggctaggctgctaggccactaggctcacaatagttactttaaaatagtctTTTCTCAGGGATTACATCAGTTGAATTGGTAAGAAACACTCTTTTGTTGTGTTAGTATTTTACATCACCATAATTATTTTAATTTAGCTATGATATTCTTTTTTAGGCTAAGGGGTTCTTTGGAAATTATAGTGTTATAGGATTTTAGGTTGCCATGGTTTAAGATTTCCTAGTTACATGGCATTTCAAACATTCAATATATCATTTCTAATTAG

Protein

Uniprot

Gene family

Uniprot term	Description
Q04891	Transcription factor SOX-13 OS=Mus musculus OX=10090 GN=Sox13 PE=1 SV=4
Q9UN79	Transcription factor SOX-13 OS=Homo sapiens OX=9606 GN=SOX13 PE=1 SV=3
B3DM43	Transcription factor Sox-5 OS=Xenopus tropicalis OX=8364 GN=sox5 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan