Gene detail

Detailed information of ayon_s0023.g235.t1 in Acropora yongei

Genomic Location: sc0000023_pilon:3676710...3683326
NR annotation: XP_029188106.2, geranylgeranyl transferase type-2 subunit alpha-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ayon_s0023.g235.t1

CTGTACTTTTGCTCTTTAATTTAAATATTTCCTTGTTTTCTTAACAAATCCTATATTTTCCGGTACAGTCAGACACTGTTAACCTATTGCACTGAAAGAACTTTTAAAGTGAAATTATTGAATGGAAAATTAGAAAGATTTGTGGTTTTACAAAAAGGTGAATCAGAAGCCTCAACAACTGCAAATGAGTCACACCTTTTCAGAGCGGAGTTAACAGCTGTTCATAGTTCTGTTCTCCAACAAGAATTGGATTCATGTCGCCTTTTGTTGCAAGAAGAACCCGACAATAAGTGGACCATGTTAACCATGGTATTGCTTATGCGGTCTTTAGATCCTCTCGTATATGAACAAGAAACGGATTTTTATTTGGAGAAACTTGTTGAAGTTGATGGTTTTAGGAAAGGCTACTACAAGGATCTCAGGAGGAAATACAAATTGGAAAATGTAATCGAGAGACACCGCAAAACTAAGGAGGACGGAGACAGGACTATTGATCTTTCTAATATGGATTTGACTTTTTTGTCGCACACGGACAGGCTTGTTCTCATGAATGAAGTAAACATGTCTAATAACCAGCTTTCCTCGCTGGATGGTTGCAATTTCTTGCAATGCGTGAAATTTCTCAACGTCAGCAAAAATAGTATTTGTCATATCACCAAGAAAAATTCACCGCTAAGACTAGGCTACCTGGAAGAGTTGTCTCTTGCAGACAACAATATTTCAAATTTAGAGTCTTTAAAAAGTCTTCGATATTGTACGCTGCTTAGAAAACTTGATATGCGAGGAAATCCTTGTTGTCAGTCCTCTAATTACAGAGAGGAAGTCAAATCTATTCTAGAAAATATCCAGGAACTTGATGGGAAGCAAATATGACCAAGTTGAAAACCTTTCAACCGAACTGAATAAATCACTGTAGGGAACCTTTCGCCAGCAGTCATCTTTTCACTGTCACCAGCCAATTTTACTATGCAAGATGACGTCATTCAGATGAAGAAGATTTGTAAGATTGACGGTAGGCGTCGGTTACACGAAATGAAATTGCTGCAACAACTACTTCTCGTTTCTCGGAATCGACTGGTAGATTTTAGACGGGATAATTAATCATTAATAACTGCACCTGGAAAATTAGAGAGTACTTTGCTGTTAATGAAAGTTAAGGAATAATAGAAAAACAAATATTCATAAAATAGGCATTGCAATTCAATGGTACTATCGGCGGCAAATGACCACAAATGTATTGATAAATAGATGATTTGTGTTTTAAATGAAATTCAAATTGTCTTAATTCTTTAATACAAGGAAGTTTCGGAGAAAGCTCTTTTATCTTCGACTTCTTAAAAAAGGCCATTAATAAAAGATCTGGAACTAAAAGTAATTTTAATTGGAGCAGAAGGCTGCTTTAAAGACTTGAAATTTTCTTTTAATAGAGTAATTATCATTGAGTACTTGCTACAATGTATCGGATGCTTGGCCGTTTTCCGTCTATAATAAATGCAATTTTCGTATTTTGTGTTGTGACGTTGGTGCAACAGCTTTTCGAAGTTTCGGAGAAACCCTTCGCGGGCGTACCTCATCCAAACATTTTCTTTTTTTTTCGAAATTGGACAATATCTATGTGTTTTATCTTCAAAATGAGAAAAAATTCTTTTGTCCTCGTGGACAACTCCAACATTGTTCCTTCGCCTATTGCAGGAATCTCGGTTCGTGGTTTGACTCCAGGCTGTCCATGGCAATACACAAAGTCATGACAAAAAATCGATGGCTCTTCATTTTTCTATTTGTAGATCATACGGTGTATCTGGAAATATCTCTCTCGAAATTCAGCTGATTATCTAGTCgactctatactcctgcaactggatttctagtttctaaaaaaaaaactatggtgctgcatcgatgggagagtgaaaacaaaaatttggttttatttaacgttaaaggttgaaatgtcaccgtgaaaggttaagaaagctgacgtttcgacgttagcccttcgtcagaacgaatagaggaattgtgtggtgttgtacgtttatatgagagtgtagaagagctttgccataggtggaaatatggtcacattcaacctttatcaactcgtttgatagaaccaaatttttgtttctactactgcaacagcttattaccGGACCTTCCGCAATGCTCATTGAATAAACTACAGCATGTACAGAATGCTTGTGAAAGACTGCTTTTCAAAGAACACAAATTCTGCCATGTAAAACCGCTTATTATGAAGGTACATTGGTTACCAGTCAGACTGAAAATGTAGTTCAGCATTTTTCGCGATATCGTCTTAGAAATTGATCGCTATCCTAGTTTTAAATCTAAGGCAACACTTGGTGATAGATCCTTTACCTGCGCAGCCGTGAAGCTGTGAAACGCCCTACCATTTGAAGTGAGCCGAGTCTGTAAATGTTTTTGAAGCAAAGTTAAAAACGCACTTATTCAGTTTAGCATTAATATTTTATCATAGTTTAGTATTTTGTAGGGTCTGTAACAAAGTGTTTTAAGTTTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14580	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005686	Cellular Component	U2 snRNP	Interproscan
GO:0030620	Molecular Function	U2 snRNA binding	Interproscan