Gene detail

Detailed information of ayon_s0028.g167.t1 in Acropora yongei

Genomic Location: sc0000028_pilon:3252516...3261848
NR annotation: XP_015775457.1, PREDICTED: glutaryl-CoA dehydrogenase, mitochondrial-like [Acropora digitifera]
Species abbreviation AYONG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ayon_s0028.g167.t1

CTATTGAATGAAAATCTCCGAAATCATTTGAAATTTGCGTGATGGCTTATCTACGAGTTTTAAGACGTTTCCTAACACCAGGAAACAATGCTCTGTTTCTTTGCCGTGCACAGAGTACAGGAAATGCGGCAATCGCTCAAAAATCTAAAGAGAAAAGGGATAAATTTGTGAAGTTCAATTGGCAGGATCCATTGAGTTTGGAAAGTTGTTTGACCGGTGAAGAAATCATGGTGAGAGATCAGTTCCGAGATTACTGCCAGGAAAAACTGATGCCAAGAATATTGATGGCAAACAGGATAGAAGATTTTGATAAAAGCATAATGACTGAAATGGGTTCACTTGGAATCCTCGGTTGCACAATTCAGGGTTATGGATGTGCAGGAGTTTCATCAGTGGCTTATGGACTGATTGCCAGAGAAGTTGAAAGGGTGGACAGTAGTTATCGCTCAGCAATGAGTGTTCAGTCATCTTTGGTCATGCATCCGATCAACGCTTATGGAACAGAAGAGCAGAAAGAGAAATATCTGCCAAAACTAGCGCGGGGAGAGCTGATTGGCTGTTTTGGTTTAACTGAACCCAACCACGGAAGTGATCCTAGTGGCATGGAAACCAGAGCTAAGTACAACCCTGCTGGGAAAAGCTACATTCTTAATGGTTCCAAGAGCTGGATTACAAACTCACCGATAGCTGATGTGTTCATTGTTTGGGCAAACTGTGAAGACAAAAGAATAAGAGGATTTATCTTGGAGAAGGGAATGAAAGGATTATCGGCACCGAAGATTGAAGGAAAATTCTCTCTGAGGGCATCAATAACAGGCCAGATTGTTATGGAGGATGTTGAAGTGCCAGAAGACAATCTTTTACCAAATGTTGATGGGTTAGAGGGACCCTTTGGCTGTCTTAACAATGCTCGTTATGGCATCGCATGGGGAGCTCTTGGAGCGGCGGAGTTTTGTCTTGCCGCTGCCAGACAGTACACCCTAGATAGATTTCAGTTTAGACGACCGCTGGCAGCAAATCAACTCATGCAAAAGAAAATGGCCGACATGATGACTGAGATTACTATTGGACTTCAGAGCTGCTTGCAGGTTGGACGACTAAAGGATGAAGGACTGTATTGCCCTGAGATGATCTCTTTGATCAAGCGAAACTCGTGTGGAAAAGCGCTGGAAATTGCACGTATGGCTAGAGATATGCTTGGCGGAAATGGAATTTCCGATGAATACCATGTTATTCGTCATGTGATGAACTTGGAAGCTGTCAACACATATGAAGGAACCCATGACATCCATGCGCTGATTCTTGGAAGAGCCATCACTGGAATACAATCTTTCACAGGCAGATGAATCATAACAGAAACACTGAGCAAGATGGTGAACCCGGCACAGCGCAGAAATTACACCAATCCAATTTGAATAGATAGAGTTAACAATCCCATTCCAGGTTCAAACAACTATAACTTGCTCGAAGTATTTAAAACGGTGAATTTCGAAAGGACATATATCTTACGAAAACAAAGGCAGTTTTCTTAGGGGACAAGTTTAAGACAAAAATCTCCATCTGCTTTTTCACTGAATTTTGATGAAAGTGTTCTCTCTTGTCAAATTTTGAAGGGTGAAGGTTAACAGCGTTTTTACAAACACACTTGATTTGACAAGTAGGACAATAGTGTGATGTGGAACTACTTTACTAGCTATCACAAAAGACAAGTTAGTTGTAAAACGATAAAAGACTAAGTTAAACTTCTTATTCTATTGTGTGGGGTTGAAATTGAAAGCTTCTCTGTTTAAATGAAAATTTTAAGGCAGCTTGCAAATTGTTATTGATTGTTTTGAAGCGTAGTATTAAACGGGACCTCCTTAGGAACGTAAGGGATATCTGCCAAATTCGTACTTCGGTCAAGGTAAGTCAGCAAACAACTTGCCGAGGTATTATTTAAAAGTTATAGAAAGTGTACTGTTGGCGTTTCTTCCCTTGGTCTTCCTTTGAATGTCAGATTTCCTTTCCAATGGTGCAAAACTTTAACTAATCAGTACAACAAAGAAAACATTAAAGTAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KHZ9	Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=GCDH PE=2 SV=1
Q92947	Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=GCDH PE=1 SV=1
P81140	Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa OX=9823 GN=GCDH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005583 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR052033 all species →	Family	Mitochondrial Glutaryl-CoA Dehydrogenase	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42807 all species →	GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0000062 all species →	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0004361 all species →	Molecular Function	glutaryl-CoA dehydrogenase activity	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0033539 all species →	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0046949 all species →	Biological Process	fatty-acyl-CoA biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00252	GCDH, gcdH; glutaryl-CoA dehydrogenase	EC:1.3.8.6	Benzoate degradation	ko00362	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.