Gene detail

Detailed information of ayon_s0041.g53.t1 in Acropora yongei

Genomic Location: sc0000041_pilon:1442742...1455669
NR annotation: XP_044181956.1, SHC-transforming protein 1-like [Acropora millepora]
Species abbreviation AYONG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ayon_s0041.g53.t1

CTGGAAGGAAGTGAAGAAATACTCCAATGATTTGAATACAAACAAAAAAATGTTTGGCAAGAAGAAGACATCCGATTCCGCAGGCGAGTGGACGAAAACGGGCAGCTTTTTGCACAAACCTTCTCGAGGATGGCTTCATTCTGATAATTCTTTGCAGGAGGGTGGCGTTTGCTATGCAGTTAAATATGTGGGTTGCCTGCAAGTTTTGAAGTCTATGCGAACTCTTCAATACGAGATGAGACAACAAGTCACACGTGAGGCTATTCTAAGATGTTCTGAAGCAGCGGGTTATCATTTAGGAAGACGAAAGAAGGCTGGGAAGAACATACAGAAACTTCTTGCAGATATTCCCTCCATGAGGGACTCTGGCATGAATGTTAACATGACTGTGTCATCAGCTGGCATCAAATTAACTAGCATTGAAAGTGGAAGATTAGTCACCAACCATGACATGCAAGGAATTTCTTTTGCCAGTGGGGGAGAAAAGGACTGCATTGATATGATAGGATATGTAGCAAAAGATGAATTTCATGGAAGAGCTTGTTTTGTTGTTGATTGTGGGGGAGGATTAGCATATGATGTCATTAACACGATTGGTCAAGCTTTTGAGATTCGCTTCAAGTTGTTTTTACAGAATCCACCTCTTGCTACAGAAGTTCCTGAAAGGTTTTCAGAATCGATATTTGAAAGTGAAGAACACACCTATGAAATGGAGTATGAACAACCTAAGGATGATGGACAGCATGTGAAGCTGCCCAACATTTATCAGTCCACAAACTCTGAGCAGCCAACTTACATGGCTCTTGATCCGCAAACCACCACAACTCATGAACTTGATAACTATGACAACCCCAACAAGGCCCTCTCTGGCCATGGTTATGATGTCCCTAAAAGAACAAATGTGGGCTATGCAGCTCCTATGAACCAAACAAACAGACGTACTACAGGCAATGGAGTTTCAGGTCACTATGATAATCCTGAAGAACTCCGTGGCGCGTCTGCAAACAGAAACGATATCAGTAACGCAGACAGCCTCAAGTTTGCTGCCGGGGCTTGCTTTGATAACCATGATACTTCAGCGTTTTATGAGAATCCATTGGCAGTACCTCTAGCTCCCCAGAGAGTTGACAGTCTGGAGCAACGGCCAACGGCTGGCGGCACAGAAACACCGTACGATAATCCTCTCGCAGTCAAGAACAATTCAGGTCAAGGGAGCTGGGCAACATTTGATGATGACGTTGCCCCTACTCCACCCCCGATGTCCTTTCCGCGACCCGCCCCAAGAAAACCCCCGCCGGTACCTAAACCGTACGCTGCCTCTAAGATTCAAGTCGTTGAACATGTCCCTCCAGCGCCAGCAGCGACACAGAATCAAGGCCCCTTGGAGACTGAAGTGTGGTACCACGGACCCATGTCTCGCGCCGAAGCCGAGCTACTGCTTGAAGATGAGGGCGACTTTTTGGTGAGAGAAAGCCATTCTAAAGCTGGGCAGTACGTTCTGTCTGGAGTTCAGAAAGGACAGCCGCGTCATTTGCTTTTGGTTGACCCAGAAGGACAGGTTCGAACGAAAGATCGTGTGTTTTCGAGTGTTCAAGAACTGGTTGCGTACCACGTGGAGAACAAGTTACCCATTATATCAGCTGGCAGCCAGGTCACAATATCACACCCTGTCCATAAACATTGATACCGCTGTACTTATTGCCGTTTTGTAGAGCTACGTTTCGTAGAAGCTACGTAACCGTTTAAACAAGTCTTGTTTTGTAGAAAACATTTTGGGTCTAAAAGTCATTTGCGAAGCTAGAAGTTGCTTGTGAAGACTGAGGTGGTCAATGTCTGGCTCGGAAATGAATGAAAAAATCGATTTGTTGAAGATGACTTGCGTGGTTTGTGTTCCGAGTTTGCACGGGTCATTATCGATTACTACGAAGGTGCTCTCATTCTAACCTAAGATCAAGTTCTGGGGAATCCCTAAAAGTCGCCATCTTATCCGTAACAATCAACTGCATATTTTCACAAGTGACGTTTCGGATTATCATGTACTTGTATAAGATCGGCCACGTGAAGGACTATGAGAAACACAAATCGGTTCAGCGTGAAGTCCGTATCAAGCAAAATGTTTGTGACAATTTTTCTACGACTCCCTTGTACTCACAGAAGCGAAATTTGACAAAATTCTTTGAGGCGAATCTTGCTATACTcaggagccgatgactaggagcatgcaactcccatactaaaccgtggcatttttacagaatgatccacttttagcatacccttttcttttttgaaggaaaggtagttccagtccagtgacgtcaattagtttcttttaattggacaaggcactcccacgggagtctcattccagggaaattcgatctaagagtaaatcggacgatgaaatcgccgtgacaggaatgtagtggtgttgcatgctcctatacatcggttcctgATACGTGTGTTGAGATGCACACATGTCTAGGTTACAGTTCCAAAATGGATTTTTGTTTATGCAAACGATTGTGCACAAAAAGCGTATATTTACCAAAGTTAAAACGGATATTTTTCGAAAGATATAGTGCTGCTTATGCTGCTTTTGTAGCAGTGTTTCGGCTGCTTGAAAATGAGGTAAGAGCACAAAGCGATTGAGGGGGTGGCCAAAGTTTTGCCTTTCCTCGTCTCCCAGCATTTCCACACAGCTACTGTCTTTGCTCTGAAACTCAATGGAAACGTGCTCAGCAGGTGATATGAAAAAGTTTGGAGCTATAACGGTGAAACAAAATTGAGTGAAGATTCATAAGAACGAAACGAAAGGAAGTGTGAAATAAATTTTAGCTCGTTACTATCACACATGCACTCTGTAGGCAGCTTTAGCATGGACCAAAGTACAAGCAAGGCACAAAACATTAATTTGTTGAGCAAACATATTAGCCCGGCTTTGCAAGTGTTCTCTACATTTTGTTAGTTTCTGTCACTGGTTTCCCAAGAACGGCGTGAAGTAAGAACTGAAAGCTTTAAGCGTTGCTTCATAAATGGGTGCCTTTTTGGCTTTGTGTAGCAATTGAATTTGCTAGTATCGAATGCGTTAAATTTGATTTAGTATACCATGGTATGGTATAATTTTATTGGTTTTATTAGATTTTTAGTGGTATTGAATTGTACACTTCCCTCTTCTGCCTTAGAGTATATTTCAATAAAGATCTTTTTTTTTTTTTTAGCCAAAGTAGGTCAAAAATAGAAAGGTAGAAATAATAGGTAACATATCGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0IIE2	SHC-transforming protein 1 OS=Bos taurus OX=9913 GN=SHC1 PE=2 SV=1
Q5M824	SHC-transforming protein 1 OS=Rattus norvegicus OX=10116 GN=Shc1 PE=1 SV=1
P98083	SHC-transforming protein 1 OS=Mus musculus OX=10090 GN=Shc1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005821 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR051235 all species →	Family	Centrosomal Protein 152/SHC-Transforming Protein	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR006019 all species →	Domain	Phosphotyrosine interaction domain, Shc-like	Interproscan
IPR035676 all species →	Domain	SH2 adaptor protein C, SH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10337 all species →	SHC TRANSFORMING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06279	SHC1; SHC-transforming protein 1	-	Endocrine resistance	ko01522	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.