Gene detail

Detailed information of ayon_s0052.g86.t1 in Acropora yongei

Genomic Location: sc0000052_pilon:2009285...2024425
NR annotation: XP_044177183.1, slit homolog 3 protein-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ayon_s0052.g86.t1

ATGATGGCAAAAAACAATCTGACGTTTTTAGCGAATGATACTTTCCAAGGCATAACTCTGCAAGCCTTGCTTCTACACAGCAACGCAATCAAGAAAATCGATGTCAGAGCTTTTGCTGGACTCCATGGGCTGAGATCATTAACACTTTTTGACAACCTATTGACGTCATTGCCAGATGGTATATTTAATGATATAACATCCATAACAAGAGTGTCAATAACTTGCAATCAACTGAAAAGACTTCCTCTAGGAACATACAATTCAGTTATAGAATGTGCTCCGTCAGCAACTTTTCATTTGATCATCCGAGACTCTACAGAAGACTTTGTGCCACACGCCTTTGCCGATACTGGATTTGGATGTCTTTTTGGCAAAGATGAAGTCTATTCTTGTACACTTTGCCCAGCAGGGTCATTCAATCGAAAATTTTTGTGTTTTAACTGTTCAGCAGGAGGTTTCTATCAAGACAAAATGGGGCAGGCGGAATGCAAAAAATGCAGTCCAGGAACTTACGTCTCAGTGGATCGTCAACCCGGTAGTAAAGCAAGTGATTGCCGTGCATGTCCATACGGTACTCTATCCAATGAAACCGCTGGCTATCGTGCTTGCAAATGTCTTCACGGTTTTTACCGGATGGATCGTTTTGGACCTTGCACACCATGCCCAGCCCATGGGCTGGTTTGTGTCAACGATACCGCGGTTTTAGCGCCCAATTATTACTGGAAGTGGATTAACAAAAGCCATGAAGATCTGTACAGAAAATTTTCAGCCAACATCCATTATTTCAAGCATGATTATAATGTTCAGTTCTCCAAGTTTCCCTATTTACTACCACAACCATTGAGATGTCCATTAGCAGGTTCATGTAAAGGTGGGATCCATTCAGAATGCCATGAGAGATATCAAGGAACCTTGTGCGCTTCTTGCAAGAATGGCTTTTACTTTCGGTTCAACAGTTGCTTAAAGTGTCCAAACCTGGCTAATTCCATTATTTCATCTGTTTTGATGGTTGCTCTCTTTGTCCTTGTCTTTCTGATGGTACTATGGGGCGACTCAAAGAAGGCGGAGAATAATCGCACTGTCGCAGACGTAATCATGTCGTGTTTCAAAATCGTGATTGGCTTTTATCAAGTCATCGCTGGTATATTTTCAGCTTTGACGAGAGTGCGATGGCCAGTAACATTGATATCTATGGAAAAGTATTTAAAATTGCTGGAGGGAAATATATTTCAGTTTGCTCCACTAAGCTGCATTCACTCACGCCTTCGAATGGACCCTTTCTCTATATTTCTTGTGACTATTGCTGTGAACTCATTAGTCATTTCTCTGATTTTCATTTACCTCTTCCTTAAACGTCGTCATATCAGAAAGAGACGGAGCTTAACCGGGAGAGAAAAGCTATGCGCCGAGTCGTGTTTGAAGAGGTCCTGTTATCGGAACATTTTCTTGTTTCTTATGGCTTCTTATCCCGTGACAAGCAAAATCATCATTCAGATCCTACCTCTTCCTGGAGCATGTGTCCAACAATGTTTTACAGATGAGCCGAGTAACTGTAGTTCTCTACTTAAGGCTGACTACTCCATCCGGTGTTTCACGACTAGGCACAAGGTATACTGGCCCATTGGCGCTGCTTTTGCTTTGTATCCTGTCGCTTTTCCTCTGTTGATACTGGTTCTTCTTTACAAATTCCGCAACTCACAGGAAGATAAGGAAGTTGCTTTTGGGCTGAGAGTGTTCTTTGAAAACTACAAGAAAGAGTTTTGGTTTTGGGAAGTCCCAGAGATGTATCGTAAACTAATTTTAATCTCTCTGATAAATCTGCTTGAATCAGAAAGTTCTTCACAGATAGCCGTTACCATGTTGACTGTGAGTGCATTTGGCATAGCCTATACCTTCTTCCGTCCCATGAAAGAAAAGTTTGAAGATCGACTCCATACGTTCGTTTTGTGGGTTATCTTTTTTGACGTTTGTCTTGGGGGAGTGTACACCACATTTGAAGGGACTCATGAACAGAAGGAAAATGACTCATTATTCGTGAATATCCTTTTCGTGGTCCTCAACAGCTTTGTGCTGCTCGTTGCCTTGGGCAAAGGAATTGCTCACTGCAAATTCGTTTGGGTAACAGTTTCTGAATGTTTGATGCAAGGTCTACATGTCATCTGGCAAGGGATTCGATCTCTGAAAATGAAGATTTTACGCTGGTTCAAATACCTGTGGCCTTCCTCTTCGGACAAGCCTGACGAAAAAGCGCTCTGGATCTCAAGTACTTCGTATGGAAGTTTACACTGCTGA

Transcript

ayon_s0052.g86.t1

TGAAAGCTTTGCTGGACTGAAAACTCTTCATACTTTGATGATGGCAAAAAACAATCTGACGTTTTTAGCGAATGATACTTTCCAAGGCATAACTCTGCAAGCCTTGCTTCTACACAGCAACGCAATCAAGAAAATCGATGTCAGAGCTTTTGCTGGACTCCATGGGCTGAGATCATTAACACTTTTTGACAACCTATTGACGTCATTGCCAGATGGTATATTTAATGATATAACATCCATAACAAGAGTGTCAATAACTTGCAATCAACTGAAAAGACTTCCTCTAGGAACATACAATTCAGTTATAGAATGTGCTCCGTCAGCAACTTTTCATTTGATCATCCGAGACTCTACAGAAGACTTTGTGCCACACGCCTTTGCCGATACTGGATTTGGATGTCTTTTTGGCAAAGATGAAGTCTATTCTTGTACACTTTGCCCAGCAGGGTCATTCAATCGAAAATTTTTGTGTTTTAACTGTTCAGCAGGAGGTTTCTATCAAGACAAAATGGGGCAGGCGGAATGCAAAAAATGCAGTCCAGGAACTTACGTCTCAGTGGATCGTCAACCCGGTAGTAAAGCAAGTGATTGCCGTGCATGTCCATACGGTACTCTATCCAATGAAACCGCTGGCTATCGTGCTTGCAAATGTCTTCACGGTTTTTACCGGATGGATCGTTTTGGACCTTGCACACCATGCCCAGCCCATGGGCTGGTTTGTGTCAACGATACCGCGGTTTTAGCGCCCAATTATTACTGGAAGTGGATTAACAAAAGCCATGAAGATCTGTACAGAAAATTTTCAGCCAACATCCATTATTTCAAGCATGATTATAATGTTCAGTTCTCCAAGTTTCCCTATTTACTACCACAACCATTGAGATGTCCATTAGCAGGTTCATGTAAAGGTGGGATCCATTCAGAATGCCATGAGAGATATCAAGGAACCTTGTGCGCTTCTTGCAAGAATGGCTTTTACTTTCGGTTCAACAGTTGCTTAAAGTGTCCAAACCTGGCTAATTCCATTATTTCATCTGTTTTGATGGTTGCTCTCTTTGTCCTTGTCTTTCTGATGGTACTATGGGGCGACTCAAAGAAGGCGGAGAATAATCGCACTGTCGCAGACGTAATCATGTCGTGTTTCAAAATCGTGATTGGCTTTTATCAAGTCATCGCTGGTATATTTTCAGCTTTGACGAGAGTGCGATGGCCAGTAACATTGATATCTATGGAAAAGTATTTAAAATTGCTGGAGGGAAATATATTTCAGTTTGCTCCACTAAGCTGCATTCACTCACGCCTTCGAATGGACCCTTTCTCTATATTTCTTGTGACTATTGCTGTGAACTCATTAGTCATTTCTCTGATTTTCATTTACCTCTTCCTTAAACGTCGTCATATCAGAAAGAGACGGAGCTTAACCGGGAGAGAAAAGCTATGCGCCGAGTCGTGTTTGAAGAGGTCCTGTTATCGGAACATTTTCTTGTTTCTTATGGCTTCTTATCCCGTGACAAGCAAAATCATCATTCAGATCCTACCTCTTCCTGGAGCATGTGTCCAACAATGTTTTACAGATGAGCCGAGTAACTGTAGTTCTCTACTTAAGGCTGACTACTCCATCCGGTGTTTCACGACTAGGCACAAGGTATACTGGCCCATTGGCGCTGCTTTTGCTTTGTATCCTGTCGCTTTTCCTCTGTTGATACTGGTTCTTCTTTACAAATTCCGCAACTCACAGGAAGATAAGGAAGTTGCTTTTGGGCTGAGAGTGTTCTTTGAAAACTACAAGAAAGAGTTTTGGTTTTGGGAAGTCCCAGAGATGTATCGTAAACTAATTTTAATCTCTCTGATAAATCTGCTTGAATCAGAAAGTTCTTCACAGATAGCCGTTACCATGTTGACTGTGAGTGCATTTGGCATAGCCTATACCTTCTTCCGTCCCATGAAAGAAAAGTTTGAAGATCGACTCCATACGTTCGTTTTGTGGGTTATCTTTTTTGACGTTTGTCTTGGGGGAGTGTACACCACATTTGAAGGGACTCATGAACAGAAGGAAAATGACTCATTATTCGTGAATATCCTTTTCGTGGTCCTCAACAGCTTTGTGCTGCTCGTTGCCTTGGGCAAAGGAATTGCTCACTGCAAATTCGTTTGGGTAACAGTTTCTGAATGTTTGATGCAAGGTCTACATGTCATCTGGCAAGGGATTCGATCTCTGAAAATGAAGATTTTACGCTGGTTCAAATACCTGTGGCCTTCCTCTTCGGACAAGCCTGACGAAAAAGCGCTCTGGATCTCAAGTACTTCGTATGGAAGTTTACACTGCTGATTCGGCACTGCTTGTCTCTGTAGTGCAAAAGGATGGAAGGATGGGTTCATGGGAAAAGCAGCTTCAAGTTTTATTTACATTTCGTTCTAAGATAAATGTTTATTACTGGAAGGGGGAACAATTTGAAATTGTTTGATCATTTTTGGGTTCTAAAATACAAATAGCTTTGTATATCTGTCCATTGTGGTAGTCACTGAAAACCACTCTGTCTAATTTGAAAGCTTGAATAAATCTAATTGAATGTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11319	G PROTEIN-COUPLED RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan