Detailed information of ayon_s0053.g134.t1 in Acropora yongei

Genomic Location: sc0000053_pilon:2229347...2253256
NR annotation: XP_029204821.2, RNA-splicing ligase RtcB homolog [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A7RKF6RNA-splicing ligase RtcB homolog OS=Nematostella vectensis OX=45351 GN=v1g198406 PE=3 SV=1
Q99LF4RNA-splicing ligase RtcB homolog OS=Mus musculus OX=10090 GN=Rtcb PE=1 SV=1
Q6AYT3RNA-splicing ligase RtcB homolog OS=Rattus norvegicus OX=10116 GN=Rtcb PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01139RtcBtRNA-splicing ligase RtcBFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027513FamilyRNA-splicing ligase RtcB homologue, eukaryoticInterproscan
IPR036025Homologous_superfamilytRNA-splicing ligase RtcB-like superfamilyInterproscan
IPR001233FamilyRNA-splicing ligase, RtcBInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11118UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003972Molecular FunctionRNA ligase (ATP) activityInterproscan
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0072669Cellular ComponenttRNA-splicing ligase complexInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008452Molecular FunctionRNA ligase activityInterproscan
GO:0000971Biological Processobsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphateInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

TOP