Gene detail

Detailed information of ayon_s0079.g11.t1 in Acropora yongei

Genomic Location: sc0000079_pilon:230466...246353
NR annotation: XP_015776009.1, PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like isoform X5 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

ayon_s0079.g11.t1

ATGGGTGGCAGAGGGGGATTTCGTAATCAGGGACGAAGTGGCGGGGGTGTTAATTTTGGGTCAATGTCCTCCACTGGTCACACTGTGCACATGCAAGGATTGCCTTTCACAGCAACAGAAAGTGATGTGAAACAGTTCTTTATGCCTCTTAATCCTGTCAGGATTTGGATAGAATATCCCGGGCGCTCGTGCACTATTCAATTTAGTGTTGACTTTCCAAGCCAAGCTGCCATGTTGAAGAACAAACAGTCAATGGAGGGCCGTGACGAATCAGATGCCAGCCGATTTTTGGGGATTTCAGGCGGCGGCGGAGTACCTGCCAAGCCCACAGGGGACGCTGTTGACACTGAAACAATTTACAAAATGAGTCGTGCACCAAGAGGAATTGCTGTCATCATTAATAACAAGAATTTCCTGAGATCTTCAGGAATGGATAAGTATACCCGCGACGGCACTAATCTCGACCGGGATGCCCTGGAGAAGTTGTTCAAGTCTCTAAAGTTTGAGGTCAGAATCTACAACGACATAACAACGGATGGGATATTGCGGATAGCCAAAGAAATGGCCACGTTGACTGATCATTCTGATTATGATGCATTCATCTTCTCCATTCTGACGCATGGTCAAGAAGGTCTCCTTTACGGAACGGATGGTACCATTTCCACCAGGGATCTCACCTCTGAGTTTAAGGATGCTACCACTTTGGCTGGAAAGCCAAAGATGTTCTTCTTTCAGGCTTGCCGAGGCGGTCGATTCATGGATGGAGTGGATGTACCTGATGGCCCTGACTCGGAAGCGAGCAGTAAGGTGTCTGTACCTGCGGAGGCCGATTTCCTCTACGCCTACTCCACCGTGCCGGGTTACTACTCCTTGAGGAATTCTGTCAAAGGCTCCTGGTTCATCCAGTCACTGACCAAGGTGTTCGAAGAAAATGCTGAGCACATGGATATTCTGCGAATGCTTACCCGTGTTAACGCTATGGTGTCCACCTACAAGTCTCGCACCGGCCAAAAAGGCTCGGATGACAAACGTCAGAGTAACTCCGACAAGAATAATGATGATCCTAGAGAGGAATTTGTTGTCCGTGCACGCGGATTGCCTTGGTCTGCAACAGCAGAAAGTGTGGCGGAATTCTTTTCAGATTGTAATATCCGTGGTGGTGCCAAAAATGGGATTCATTTCACGTACAGTAGTGAAGGACGCCCTAGTGGGGAATGTTTTGTGGAACTTGTGTCCCTAGAAGACATGGAAAACGCTCTTGCCAAAAGCAATAACTTCCTTGGTAAGAGATATGTAGAGGTGTTTGAATCTAAAGCTGGAGAGATGGAATGGACTTGTAAAAGAATGGGCCAGCCCCAAGACAGAGGCAATGAGGCAGTGGTTCGACTAAGGGGCCTACCATTTCAAGTGTCTAAAGAAGAAATTGCACAGTTTTTTACAGGGCTGGAGATAGTTCCTAATGGGATAACAATCACTCTGGATGAGGACGGGCGGACTACGGGGGATGCTTTTGTGGAATTTGCTTCTCCTGATTTAGCTTCTCAAGCTATGAAAAAAAACAAAGAATCCATAGGGCACAGGTACATTGAGATTTTCAAGAGCTCAAAAGCAGATATTAAGTATGTGTCAAAGCCAAAACTTAAGCCTTTAATGTCCACTCGACCTGGTCCTTACGATAGATCACCTGGTGGCTTTGGAGGTGGGCGGGGACGATTTGGTGGTGTTGTGGCGGGAGATGGCAGAAGGTTTAGAGGACGAGGAGGTCCTGTTTTTGGAGGGGGTTATGGAGGGGACTACAATGGGTATGGAGGGGGACGCGGAGGGTCAGGCCGTGGTAGCCGTGGTGGAAGAGGCATGGGTGGCCGAGGAGGATTTCGTAATCAGGGACGAAGTGGTGGGGGTGGTAATTTTGGATCAATGTCCTCCACTGGTCACACTGTGCACATGCGAGGATTGCCTTTTGCAGCAAAAGAAAGTGACGTTAAACAGTTCTTTATGCCTCTTAACCCTGTCAACATTTGGATGGAATATTCCGGGGGCTCTTTCAGTGGTCAAGTTGATGTTGACTTTGCAAGCCACGAGGATGCTCAAGCTGCCATGTTGAAGAACAAACAGTCAATGGGTCATCGTTATATTGAGTTGTTTTTACGCTCCCAGTCTGATATGGAAGATGTCTCTGGAAGAGGTTGGGCTAGCTCAGAAAGTGGAGGACAGAATTTTGGCAGTGGAAATAGTGGTGGTAAGAAAATAGGGAGTTGA

Transcript

ayon_s0079.g11.t1

GGTAGGGCCGTGGTGGCCGTGGTGGAAGAGGCATGGGTGGCAGAGGGGGATTTCGTAATCAGGGACGAAGTGGCGGGGGTGTTAATTTTGGGTCAATGTCCTCCACTGGTCACACTGTGCACATGCAAGGATTGCCTTTCACAGCAACAGAAAGTGATGTGAAACAGTTCTTTATGCCTCTTAATCCTGTCAGGATTTGGATAGAATATCCCGGGCGCTCGTGCACTATTCAATTTAGTGTTGACTTTCCAAGCCAAGCTGCCATGTTGAAGAACAAACAGTCAATGGAGGGCCGTGACGAATCAGATGCCAGCCGATTTTTGGGGATTTCAGGCGGCGGCGGAGTACCTGCCAAGCCCACAGGGGACGCTGTTGACACTGAAACAATTTACAAAATGAGTCGTGCACCAAGAGGAATTGCTGTCATCATTAATAACAAGAATTTCCTGAGATCTTCAGGAATGGATAAGTATACCCGCGACGGCACTAATCTCGACCGGGATGCCCTGGAGAAGTTGTTCAAGTCTCTAAAGTTTGAGGTCAGAATCTACAACGACATAACAACGGATGGGATATTGCGGATAGCCAAAGAAATGGCCACGTTGACTGATCATTCTGATTATGATGCATTCATCTTCTCCATTCTGACGCATGGTCAAGAAGGTCTCCTTTACGGAACGGATGGTACCATTTCCACCAGGGATCTCACCTCTGAGTTTAAGGATGCTACCACTTTGGCTGGAAAGCCAAAGATGTTCTTCTTTCAGGCTTGCCGAGGCGGTCGATTCATGGATGGAGTGGATGTACCTGATGGCCCTGACTCGGAAGCGAGCAGTAAGGTGTCTGTACCTGCGGAGGCCGATTTCCTCTACGCCTACTCCACCGTGCCGGGTTACTACTCCTTGAGGAATTCTGTCAAAGGCTCCTGGTTCATCCAGTCACTGACCAAGGTGTTCGAAGAAAATGCTGAGCACATGGATATTCTGCGAATGCTTACCCGTGTTAACGCTATGGTGTCCACCTACAAGTCTCGCACCGGCCAAAAAGGCTCGGATGACAAACGTCAGAGTAACTCCGACAAGAATAATGATGATCCTAGAGAGGAATTTGTTGTCCGTGCACGCGGATTGCCTTGGTCTGCAACAGCAGAAAGTGTGGCGGAATTCTTTTCAGATTGTAATATCCGTGGTGGTGCCAAAAATGGGATTCATTTCACGTACAGTAGTGAAGGACGCCCTAGTGGGGAATGTTTTGTGGAACTTGTGTCCCTAGAAGACATGGAAAACGCTCTTGCCAAAAGCAATAACTTCCTTGGTAAGAGATATGTAGAGGTGTTTGAATCTAAAGCTGGAGAGATGGAATGGACTTGTAAAAGAATGGGCCAGCCCCAAGACAGAGGCAATGAGGCAGTGGTTCGACTAAGGGGCCTACCATTTCAAGTGTCTAAAGAAGAAATTGCACAGTTTTTTACAGGGCTGGAGATAGTTCCTAATGGGATAACAATCACTCTGGATGAGGACGGGCGGACTACGGGGGATGCTTTTGTGGAATTTGCTTCTCCTGATTTAGCTTCTCAAGCTATGAAAAAAAACAAAGAATCCATAGGGCACAGGTACATTGAGATTTTCAAGAGCTCAAAAGCAGATATTAAGTATGTGTCAAAGCCAAAACTTAAGCCTTTAATGTCCACTCGACCTGGTCCTTACGATAGATCACCTGGTGGCTTTGGAGGTGGGCGGGGACGATTTGGTGGTGTTGTGGCGGGAGATGGCAGAAGGTTTAGAGGACGAGGAGGTCCTGTTTTTGGAGGGGGTTATGGAGGGGACTACAATGGGTATGGAGGGGGACGCGGAGGGTCAGGCCGTGGTAGCCGTGGTGGAAGAGGCATGGGTGGCCGAGGAGGATTTCGTAATCAGGGACGAAGTGGTGGGGGTGGTAATTTTGGATCAATGTCCTCCACTGGTCACACTGTGCACATGCGAGGATTGCCTTTTGCAGCAAAAGAAAGTGACGTTAAACAGTTCTTTATGCCTCTTAACCCTGTCAACATTTGGATGGAATATTCCGGGGGCTCTTTCAGTGGTCAAGTTGATGTTGACTTTGCAAGCCACGAGGATGCTCAAGCTGCCATGTTGAAGAACAAACAGTCAATGGGTCATCGTTATATTGAGTTGTTTTTACGCTCCCAGTCTGATATGGAAGATGTCTCTGGAAGAGGTTGGGCTAGCTCAGAAAGTGGAGGACAGAATTTTGGCAGTGGAAATAGTGGTGGTAAGAAAATAGGGAGTTGAAGCGAAGCTGTTTCGGGTTTGCTTTTGAATCTTGCTTTGATACGATTACATTACTAGTTGCCTTTACTCTCATAAAAACAGTTAAATGAATATTTTTGTTGAAAACTACTTTCCAATGAAGTGAAAAGAGATTTCTAGTAACTTTTCATTGCTGAGAGGATGTCTGCGATATGTCCAGGAATGTGTACAACAACAAAAATGAAATTTTGTCAACAATTTGGTATATTACAAAAAATGGCTGGAAATGACAATTTTGAAGAAGTGAAAGGAGGGCCCCTTTCAAGGTGACAAATATGCCGAGAATAAGAATGTTGCCAAATTTGTCATCTAGCCATAAGCAGAAGGCATTGAGGATAAAGTGGAGACGTTGCGAATGAAAGCGTAAAGATTTCAATAAATAAGGAGTAAAAGTGAATTTTCAAGTGGTAAAAGAAGGGGCCCTTTGCAAGGTGGTGGTAGTAAATATGTTGAGAAGGA

Protein

Uniprot

Uniprot term	Description
P55795	Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens OX=9606 GN=HNRNPH2 PE=1 SV=1
Q5RD26	Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii OX=9601 GN=HNRNPH2 PE=2 SV=1
P70333	Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus OX=10090 GN=Hnrnph2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656	Peptidase_C14	Caspase domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR011600	Domain	Peptidase C14, caspase domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015917	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR002138	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR001309	Domain	Peptidase C14, p20 domain	Interproscan
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR033139	Active_site	Peptidase family C14A, cysteine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12898	HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H	-	Spliceosome	ko03041	deepkoala