Gene detail

Detailed information of ayon_s0079.g2.t1 in Acropora yongei

Genomic Location: sc0000079_pilon:32761...54725
NR annotation: XP_044174845.1, protocadherin Fat 4-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ayon_s0079.g2.t1

atgtttcacgtggagccagactctggtcacgtgcgagtcgcttgctcattgattgataaagaagattcaaaattcactttacaagtcagtgcatctgatggcgagagaacatcaaccaaccctgccactgtagacatattccttttgcgcgatgaagatgctgtcattttaacgacaggcattcaaccaatggagataacgagaaagagacaagagtttatcgggatgctcgagttaataacaacaggaaaggcttttatcaagcatttagtgccacaagacgaaacaaacatGACATCAGTGACTTTTCACGTAGTCAAGAATAAAACGGTGTTAACAGGCTCAGAAATTTTGAGCTACCTCACAGGCAACAAGGAGATCTTCGTTGCAATTTATGAACAGTGGAAAATTCAAACCTACCAGAGCCCTGTGCGTGTGGCCCCCAAGGCGAGGAAAGCAGAGGATGATGAGGATTTGTCAGCCGTAGCCGGGGCAATGATTTGCTTTGGAGTGCTGATCGGTATCGCCGCTGTTATTGTGCTGTTCACTCTCATTCGAAGAAAACAAGCTGGCAAAAGTCCTTTCAAGAAAAAGAAACGAGTTAGGTTTAACGACAACCCGTTTTTCATCTCGCCTAATCCAAATGCAATTGTGAGAGACCAAGTTGAAAGTGCGCAGGAAGCACAAGAAGTCATAGTCCACCTTCCGGGTGAGGACAATAGTTCCCTGGAAGGAAGTGAATGTTCGGATGAGGTCATCATGAACTTCGGTGCTGCCGTGCGTATGGCGGCGTGTCGCGAGAAAGACCTTTTCGATCTACGAGATGAAAAAGATCAGGACTGGTTTTTCCCTCCACCTCCAATAGGGCCACCTCCGGCACCACCTGATTCCGATTCCGATTCCGGCTCCGTGAATGAGTCAATTGCTTGCGAATCCGTATCTCACGAGAACAATGTGATAGCTGACGCTACTGAGATTGTGGTCGAAATTCTCGACGAGAATGATAACAGTCCACAGTTCCAAAGCTCAACATCTGTCGCAGTCAGAGAAGACGCATTGGTAGGATCTCAAATATACACCGTTGTCGCAACTGACATAGATGTCGCTGAAAACGGAAAGATGGTTTACGAGATTGTTGGCGGTGTCTTTTCCTTGAATAATCAAACTGGAGTATTATCGCCGTCCAGTTCACTCGATTACGAGATCACTCCTCAGTACGTGTTGAACATGTCGGCGTCCGACCTTGGTCATCCAACACGCCGCACATTTATTGATGTCACAGTGAACGTGATGGATGTCAACGATAATTCACCTGTGTTAAACCCAAGGACTGTCCAAGTCTCGCTTTCCGAGGGAACTGTTCCTGGTACCTCTGTTGCTCAGCTTAAGGCAACCGACGCTGATTCAGATGCGAACGGAAACATAACGTATCACATCGTGGAAGGCGGGGTCAACAAGTTCATTATAGACAATGTGACAGGCGTCATCAGCACTACTGCGGCTTTCGATAGGGAATCTGGCACGAATGAGTACACGcttgttgtaaaggcctctgacgaagactttgaccccaattcagtcatatcccactttgtcgttggaggtgatggtgctgatatgtttcacgtggagccagactctggtcacgtgcgagtcgcttgctcactgattgataaagaagattcaaagttcactttacaagtcagtgcatctgatggcgagaaaacatcaaccaaccctgccactgtagacatattccttttgcgcgatgaagatgctgtcattttaacgacaggcattcaaccaatggagataacgagaaagagacaagagtttatcgggatgctcgagttaataacaacaggaaaggcttttatcaagcatttagtgccacaagacgaaacaaacatGACATCAGTGACTTTTCACGTAGTCAAGAATAAAACGGTGTTAACAGGCTCAGAAATTATAAGCTACCTCACAGGCAACAAGGAGATCTTCGTTGGAATTTATGAACAGTGGAAAATTCAAACCTATCAGGTCTACCAGAGCCCTGTACGTGTGGTCCCCGAGGCGCGGAAAGCAGAGGATGATGACGATTTGTCAGCCGTAGCCGGGGCAATGATTTGCTTTGGAGTGCTGATCGGTATCGCCGCAGTTATTGTGCTATTCACACTCATTCGCAGAAAACAAGCTGGCAAAAGTCCTTTCAAGAAAAAGAAACGAGCTAGGTTTAACGACAACCCGTTTTTCATCTCGCCTAATCCAAACGCAATTGTGAGAGACCAAGTTGAAAGTGCGCAGGAAGCACAAGAAGTCATAGTCCACCTTCCGGGTGAGGACAATAGTTCCCTGGAAGGAAGTGAATGTTCGGATGAGGTCATCATGAACTTCGATGCCGCCGTACGTATGGCGGCGTGTCGCGAGAAAGACCCTTTCGATCTACGAGATGAAAAAGATCAGGAATGGTTTTTCCCTCCTCCTCCAATAGGGCCACCTCCGGCACCACCCGATTCCGATTCCGGCTCCGAGAATGAGTCAATTGCTTCCGAATCCGTATCTCACGAGAACAATGTGATAGCTGATGCTACCGAGGTTTTCAGACAGGGCGAATATTTCCCCGAGACTTTTCGATCGGGCAAAGAAGGTAACTTTGATGGTATCGTACAAAACGGGTCGCCTTCGGGATCAACGATGGCAAGCTTGAACGACCCCTACATCACGGCAGCTCCCAGGATTCCATCAACCGGTGGCTCGTATCTGAGACAATTTCCCTTGAACGAAATCAAAACCGACCTCTAA

Transcript

ayon_s0079.g2.t1

ctacaataaaggcctctgacgaagactttgaccccaattcggtcatatcccactttgtcgttggaggtgatggtgttgatatgtttcacgtggagccagactctggtcacgtgcgagtcgcttgctcattgattgataaagaagattcaaaattcactttacaagtcagtgcatctgatggcgagagaacatcaaccaaccctgccactgtagacatattccttttgcgcgatgaagatgctgtcattttaacgacaggcattcaaccaatggagataacgagaaagagacaagagtttatcgggatgctcgagttaataacaacaggaaaggcttttatcaagcatttagtgccacaagacgaaacaaacatGACATCAGTGACTTTTCACGTAGTCAAGAATAAAACGGTGTTAACAGGCTCAGAAATTTTGAGCTACCTCACAGGCAACAAGGAGATCTTCGTTGCAATTTATGAACAGTGGAAAATTCAAACCTACCAGAGCCCTGTGCGTGTGGCCCCCAAGGCGAGGAAAGCAGAGGATGATGAGGATTTGTCAGCCGTAGCCGGGGCAATGATTTGCTTTGGAGTGCTGATCGGTATCGCCGCTGTTATTGTGCTGTTCACTCTCATTCGAAGAAAACAAGCTGGCAAAAGTCCTTTCAAGAAAAAGAAACGAGTTAGGTTTAACGACAACCCGTTTTTCATCTCGCCTAATCCAAATGCAATTGTGAGAGACCAAGTTGAAAGTGCGCAGGAAGCACAAGAAGTCATAGTCCACCTTCCGGGTGAGGACAATAGTTCCCTGGAAGGAAGTGAATGTTCGGATGAGGTCATCATGAACTTCGGTGCTGCCGTGCGTATGGCGGCGTGTCGCGAGAAAGACCTTTTCGATCTACGAGATGAAAAAGATCAGGACTGGTTTTTCCCTCCACCTCCAATAGGGCCACCTCCGGCACCACCTGATTCCGATTCCGATTCCGGCTCCGTGAATGAGTCAATTGCTTGCGAATCCGTATCTCACGAGAACAATGTGATAGCTGACGCTACTGAGATTGTGGTCGAAATTCTCGACGAGAATGATAACAGTCCACAGTTCCAAAGCTCAACATCTGTCGCAGTCAGAGAAGACGCATTGGTAGGATCTCAAATATACACCGTTGTCGCAACTGACATAGATGTCGCTGAAAACGGAAAGATGGTTTACGAGATTGTTGGCGGTGTCTTTTCCTTGAATAATCAAACTGGAGTATTATCGCCGTCCAGTTCACTCGATTACGAGATCACTCCTCAGTACGTGTTGAACATGTCGGCGTCCGACCTTGGTCATCCAACACGCCGCACATTTATTGATGTCACAGTGAACGTGATGGATGTCAACGATAATTCACCTGTGTTAAACCCAAGGACTGTCCAAGTCTCGCTTTCCGAGGGAACTGTTCCTGGTACCTCTGTTGCTCAGCTTAAGGCAACCGACGCTGATTCAGATGCGAACGGAAACATAACGTATCACATCGTGGAAGGCGGGGTCAACAAGTTCATTATAGACAATGTGACAGGCGTCATCAGCACTACTGCGGCTTTCGATAGGGAATCTGGCACGAATGAGTACACGcttgttgtaaaggcctctgacgaagactttgaccccaattcagtcatatcccactttgtcgttggaggtgatggtgctgatatgtttcacgtggagccagactctggtcacgtgcgagtcgcttgctcactgattgataaagaagattcaaagttcactttacaagtcagtgcatctgatggcgagaaaacatcaaccaaccctgccactgtagacatattccttttgcgcgatgaagatgctgtcattttaacgacaggcattcaaccaatggagataacgagaaagagacaagagtttatcgggatgctcgagttaataacaacaggaaaggcttttatcaagcatttagtgccacaagacgaaacaaacatGACATCAGTGACTTTTCACGTAGTCAAGAATAAAACGGTGTTAACAGGCTCAGAAATTATAAGCTACCTCACAGGCAACAAGGAGATCTTCGTTGGAATTTATGAACAGTGGAAAATTCAAACCTATCAGGTCTACCAGAGCCCTGTACGTGTGGTCCCCGAGGCGCGGAAAGCAGAGGATGATGACGATTTGTCAGCCGTAGCCGGGGCAATGATTTGCTTTGGAGTGCTGATCGGTATCGCCGCAGTTATTGTGCTATTCACACTCATTCGCAGAAAACAAGCTGGCAAAAGTCCTTTCAAGAAAAAGAAACGAGCTAGGTTTAACGACAACCCGTTTTTCATCTCGCCTAATCCAAACGCAATTGTGAGAGACCAAGTTGAAAGTGCGCAGGAAGCACAAGAAGTCATAGTCCACCTTCCGGGTGAGGACAATAGTTCCCTGGAAGGAAGTGAATGTTCGGATGAGGTCATCATGAACTTCGATGCCGCCGTACGTATGGCGGCGTGTCGCGAGAAAGACCCTTTCGATCTACGAGATGAAAAAGATCAGGAATGGTTTTTCCCTCCTCCTCCAATAGGGCCACCTCCGGCACCACCCGATTCCGATTCCGGCTCCGAGAATGAGTCAATTGCTTCCGAATCCGTATCTCACGAGAACAATGTGATAGCTGATGCTACCGAGGTTTTCAGACAGGGCGAATATTTCCCCGAGACTTTTCGATCGGGCAAAGAAGGTAACTTTGATGGTATCGTACAAAACGGGTCGCCTTCGGGATCAACGATGGCAAGCTTGAACGACCCCTACATCACGGCAGCTCCCAGGATTCCATCAACCGGTGGCTCGTATCTGAGACAATTTCCCTTGAACGAAATCAAAACCGACCTCTAAGATATGTAAATTGACTCAAACAGGGCTGGAAGCTTAGACTTCTATACAGCTAGAGACACACGTTTTTCAGCAGTCTATACAAAAAAAAAAGCCACGCCTTGCATCTTTTGCGATAACAAAGAAATCTTTCGTAC

Protein

Uniprot

Uniprot term	Description
Q6V0I7	Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV=2
Q9NYQ8	Protocadherin Fat 2 OS=Homo sapiens OX=9606 GN=FAT2 PE=1 SV=2
O88277	Protocadherin Fat 2 OS=Rattus norvegicus OX=10116 GN=Fat2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16505	CDHR5, MUCDHL; cadherin-related family member 5	-	Cell adhesion molecules	ko04515	deepkoala