Gene detail

Detailed information of ayon_s0089.g28.t2 in Acropora yongei

Genomic Location: sc0000089_pilon:965852...1019024
NR annotation: XP_044181750.1, uncharacterized protein LOC114964961 [Acropora millepora]
Species Acropora yongei · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ayon_s0089.g28.t2

ATGGAGGGTTTTGAGAGTGGAAATAAAGTTCAGGCATTTGATTCTGTGCTTGGACAATGGCTGAATGGAACTGTTGTTGAAGTTGATGGTGGCAAAGTCCAAATACACTGGGCAGGCTACAACAAGTTTTTCAATGTGTGGTTGGACGCCGTAGACGTTCGAAAACCGGAGGACGAGAGGCCTCTGGATAGGCGACGTCCGGTGTCGAAATCCAACTTTCCCAAACGGCAACATCCCAAGCATCTCCAAAAGGATGACCTTGTTCGTGTATTTGAAACGAACCAAGATTGGTCTGAGGCCCAAACTGTAGCAAAAAACGACTGCTTTAAAGGAGAGGTAGCGTTGGTGAGCGGAAAGGTAGTGAGGTATGAATACCTGAAAGAACATTCCGAAATAAGCAGCCGCGATGAAGTACCCAGATGTGAACAGAAGGCTTTCAATCTCCTTAGAAAAGAGAAATCAAAAGAAGAAAGTAGGATCTACTTGCAGCATAGTGATGGCGAAGCCTGCAGCAAAGACGGAGACAGTGCCTTTCCTGAACTACAGGATGTGGCTAGTGATGAAGAAACGAATACTAAAGACGATGAAAGTGACTTTCCTGACTCACATGATTTCGAAAAAGCATGGGGCGAGGACGAAATTGACGATGTTCTGGAACAGTTGAGGTTTGAAGATGCTTTGAAAGAACTTCGGCAAAATCAAGAAAAATTATTGGAAAATCAAAACGCAATTCAAAAGTTGCTAACCGCCGTAGAAGCGCTCTTGAACAAGAGACTTCTGAAGAGAAAACAAGCCCTGGAAGTTGTGACCTTGCCTTCGGTTCCAGCCAGGCCCAGCTCAAGTTATCCAGTGACCCCATTGTCATGGCAAGATTCCACTTCCCCATTAGTCAGCCGCATGTCAGCCCCTCCAGTTACTTCTCCTTCGTCCCAGATGGCACCTTTAAACCATTCTAACTCCACTGGCGTCGAGGAAAATCCATGTTTCTCGGGTGCTCTTTTTAACCAAAGTCCACCAAACATTATGAGCAACAATGATGCCCAAATAGAGAGCACACATTCTTCGCTTGCCACCAACAGTGGGCCAGAGTTCTCCGAAGATTTCAGCACAAGTTTTTCCACTAGGACAGAGGAAATGGGTGGACGTCTCTGTTCCTCGGCGGGTACTCCTACTAACTCTAGTTCATCCAACCTAACGAATGAGGAGGTCACCCTAGCAGAATATACGCATCCTTCACTTGCGACCTACAATGGGCCAATTTCACGCGATTTGATACATTTGGCTGCCGCCAATTCATCAAATTGCAAGACTTTTGTCTTCAAATTAATGGATGtgcttggtggcgagaagaaggaactttgtttatcttccagggaagacagcccaccacacctcagtttcacgctgaaacaagaaagtgatattgagatcttcacaaaaccctgggaagagattgataggccaattgatattttgctagtgactgcggagggctgtgagttcttgagctttcttcctttcctggatcaacctttcaagatttacaaatttggcattggttatatgtactttggacatgtgggaggtgtcagttaccaaggaaaattgttggtttcattaatgcattgtcctaaagaatctgaatgcccagggggccctttgacagtgattcagagtgctatcaaggtcttacaacctaaggctgtagtttcactgggaatttgcactagcttagccccagagaaggtcagattgggagatgtggtcatatcttcgaggataacatgtgcagaggggtttcatactcctgtcagcccactttttggcggtctagctcgagatgcacccaatgggtgggctgctccattgaaaaatagaggtgaattggaagttaaagtacattgtgatggtgatatcctgatccagtcactggcagagaagtgtcgatatgatgatattttgaagctttatcctggggcagttgcaagtgacacagaaggcaaaggtgtttatagtgcggcccatgatgcaaatattgagtgggtgatagtgaaaggtgtcgccggttattttcatcacggcaagcctgcaactcccgaatggatgtcttttgcaagtgctatggctgcctctgtggtggccaagatgttagaggatccaacagttttcctggagtggccgcactatagccaaggtcggcaaggtgtgcctcacagcacagctcaagaccagcattccatcagagagtatggagacagacttgtcaagttgctaatctgcacagtcagtctcaacgaagaacaacgagaagaagtcgaaagaactttaaccgtagctgtccaaagatatttaaaatttaacagtaatccaaccattgaagcctttgttgaacacttaattaaagtgtaccaggtgtccttggtcgctgttggtagtggttctattatcttcactgtggagtgccctacattagatagtctagagcatctctggggtgactatctctctggtgagcttgataaagtggttgagcgatgctttgtgactgaagacatgaggaagagactcaacctggacaaaattggcctcaagacaatcatagaagaagagaactactggaactgcttgaaggctctcagggagatttcaagtacatacttagaaaatcaagaaagaaccaacattgagcttggaggagtgacagATGAAGAAGACGATAGTGGAATCTCCACAAGTCAAGGAGAAGAAtatcagtcactgggtgaccatcaaaaagccactaagtattataagaaagatgtgaaaactgagctagaaatcggtgatcaagctgaaaaagaaagagcctatggaaatctcggtgttacttacgtctcactgggcggctgtcgaaaagccattgagtattatgaaaaagatttaaaaactgcattacaaagcggtgatcgggccagagaggaaagagcctatgcaaatctcggtaatgcttacgactcactgggtgactatcgcaaagccattgagtatcatgaaaaagatttgaaaactgcgatagaaattggttatcgggccgaggaaggagcagcctatggaagtctcggtaatgcttaccaggcactgggaaactatcaaaaagccattaattatcatgaaaaagatttgagcattgcaatagaaatcggtgatcaggcgggagaaggagcagcatatggaaatctcggtaatgcttacgactcactgggtgactatctaaaagccattgagtatcatgaaaaagatttaaacattgcacttgaaatcggtgatcgggccggagaaggaggggcctatggaaatctcggtaatgcttacgactcgctgggtgactctcaaaaagccattgagtatcatcgaaaagatttaaaaattgcaatagaaatcggtgatcgggctggggaaggagacgcatatggaaatcttggtaatgcttaccagtcactaggtgattatcaaaaagctattgagtatcatgaaaaacaattgaaaattgcaacagagattggtgatcggggtggagaaggaagagcctatggaaatctcggtaatgcttacgactcactgggtgactctcaaaaagccatcgagtatcatcaaaaagatttaaaatttgcattagaaatcgatgatcgggctggagaaggaggcgcatatggaaatcttggtattgcttaccagtcactgggtgactatcaaaaagctattgagtatcatgaaaaacaattgaaaattgcaacagagattggtgatagagctggagaaggaagagcctatgggaatctcggtaatgcttacgactcactgtgtgactctcaaaaagccattgagtattatgagcaacgattgaagattgcaagagaaatcggtgatagagcaggagaaggaagagcctatggcagttttggtaatgcttaccagtcactgggtgactatcaaaaagccattgagtatcaagaaaaacatttaaaaattgcaacagaaatcggtgatcgcgccggagaaggaggagcctatggaattttcggtaatgttttccagtcactgggtgattatcaaaaagccattgagtatcaagaaaaatatttaaaaattgcgatagaaattggtgatcgggctggaaaaggaggggcctatggaaatcttagtattgcgtacggctcactgggtgactcccgaaaagcgactgagtattaccaaaaacgattgaaacttgtgacttaa

Transcript

ayon_s0089.g28.t2

tctggccatttatcgaaagaagagattgaaagagtgagtttcctacctattaagagatcttttcttcgaattacttaactattgtaaccaaaattcgagcaattttgtaaactttaaccggacgatattacggaaaagggaagccatctttgtttttattttttgcgtggacttcgcatggatttaaaatctcgcgccatactagtgcccaggttgcgcgcggtctcaaaaactccaggggcctccttaaTCACGTGACCTTTGGTCCTCATAATGTCTGCTGGCATCAGTTTCATGTATCAACAAAGAAAAAACGGAAATCTGCGGAAATAGCTGGAAGTAGTTGATCCCGTGTGTATCGGCTGACTAGATACCGATATAAAGCTTATGCAGAAACGAAATTCGTTGAAATTCATTCGACGATTGGCCCAGTTCAGCCTGGTTTCTGTTCGTGGAGgtccaaagtcgatttgTAACACCTAGTAAGAAGgaagacaaggagtatgttatggaatcatctagagacagccattccctgagcgactgtaaagTATCAGCCCACGTAACACTTTAATAGCAAAATCATGGAGGGTTTTGAGAGTGGAAATAAAGTTCAGGCATTTGATTCTGTGCTTGGACAATGGCTGAATGGAACTGTTGTTGAAGTTGATGGTGGCAAAGTCCAAATACACTGGGCAGGCTACAACAAGTTTTTCAATGTGTGGTTGGACGCCGTAGACGTTCGAAAACCGGAGGACGAGAGGCCTCTGGATAGGCGACGTCCGGTGTCGAAATCCAACTTTCCCAAACGGCAACATCCCAAGCATCTCCAAAAGGATGACCTTGTTCGTGTATTTGAAACGAACCAAGATTGGTCTGAGGCCCAAACTGTAGCAAAAAACGACTGCTTTAAAGGAGAGGTAGCGTTGGTGAGCGGAAAGGTAGTGAGGTATGAATACCTGAAAGAACATTCCGAAATAAGCAGCCGCGATGAAGTACCCAGATGTGAACAGAAGGCTTTCAATCTCCTTAGAAAAGAGAAATCAAAAGAAGAAAGTAGGATCTACTTGCAGCATAGTGATGGCGAAGCCTGCAGCAAAGACGGAGACAGTGCCTTTCCTGAACTACAGGATGTGGCTAGTGATGAAGAAACGAATACTAAAGACGATGAAAGTGACTTTCCTGACTCACATGATTTCGAAAAAGCATGGGGCGAGGACGAAATTGACGATGTTCTGGAACAGTTGAGGTTTGAAGATGCTTTGAAAGAACTTCGGCAAAATCAAGAAAAATTATTGGAAAATCAAAACGCAATTCAAAAGTTGCTAACCGCCGTAGAAGCGCTCTTGAACAAGAGACTTCTGAAGAGAAAACAAGCCCTGGAAGTTGTGACCTTGCCTTCGGTTCCAGCCAGGCCCAGCTCAAGTTATCCAGTGACCCCATTGTCATGGCAAGATTCCACTTCCCCATTAGTCAGCCGCATGTCAGCCCCTCCAGTTACTTCTCCTTCGTCCCAGATGGCACCTTTAAACCATTCTAACTCCACTGGCGTCGAGGAAAATCCATGTTTCTCGGGTGCTCTTTTTAACCAAAGTCCACCAAACATTATGAGCAACAATGATGCCCAAATAGAGAGCACACATTCTTCGCTTGCCACCAACAGTGGGCCAGAGTTCTCCGAAGATTTCAGCACAAGTTTTTCCACTAGGACAGAGGAAATGGGTGGACGTCTCTGTTCCTCGGCGGGTACTCCTACTAACTCTAGTTCATCCAACCTAACGAATGAGGAGGTCACCCTAGCAGAATATACGCATCCTTCACTTGCGACCTACAATGGGCCAATTTCACGCGATTTGATACATTTGGCTGCCGCCAATTCATCAAATTGCAAGACTTTTGTCTTCAAATTAATGGATGtgcttggtggcgagaagaaggaactttgtttatcttccagggaagacagcccaccacacctcagtttcacgctgaaacaagaaagtgatattgagatcttcacaaaaccctgggaagagattgataggccaattgatattttgctagtgactgcggagggctgtgagttcttgagctttcttcctttcctggatcaacctttcaagatttacaaatttggcattggttatatgtactttggacatgtgggaggtgtcagttaccaaggaaaattgttggtttcattaatgcattgtcctaaagaatctgaatgcccagggggccctttgacagtgattcagagtgctatcaaggtcttacaacctaaggctgtagtttcactgggaatttgcactagcttagccccagagaaggtcagattgggagatgtggtcatatcttcgaggataacatgtgcagaggggtttcatactcctgtcagcccactttttggcggtctagctcgagatgcacccaatgggtgggctgctccattgaaaaatagaggtgaattggaagttaaagtacattgtgatggtgatatcctgatccagtcactggcagagaagtgtcgatatgatgatattttgaagctttatcctggggcagttgcaagtgacacagaaggcaaaggtgtttatagtgcggcccatgatgcaaatattgagtgggtgatagtgaaaggtgtcgccggttattttcatcacggcaagcctgcaactcccgaatggatgtcttttgcaagtgctatggctgcctctgtggtggccaagatgttagaggatccaacagttttcctggagtggccgcactatagccaaggtcggcaaggtgtgcctcacagcacagctcaagaccagcattccatcagagagtatggagacagacttgtcaagttgctaatctgcacagtcagtctcaacgaagaacaacgagaagaagtcgaaagaactttaaccgtagctgtccaaagatatttaaaatttaacagtaatccaaccattgaagcctttgttgaacacttaattaaagtgtaccaggtgtccttggtcgctgttggtagtggttctattatcttcactgtggagtgccctacattagatagtctagagcatctctggggtgactatctctctggtgagcttgataaagtggttgagcgatgctttgtgactgaagacatgaggaagagactcaacctggacaaaattggcctcaagacaatcatagaagaagagaactactggaactgcttgaaggctctcagggagatttcaagtacatacttagaaaatcaagaaagaaccaacattgagcttggaggagtgacagATGAAGAAGACGATAGTGGAATCTCCACAAGTCAAGGAGAAGAAtatcagtcactgggtgaccatcaaaaagccactaagtattataagaaagatgtgaaaactgagctagaaatcggtgatcaagctgaaaaagaaagagcctatggaaatctcggtgttacttacgtctcactgggcggctgtcgaaaagccattgagtattatgaaaaagatttaaaaactgcattacaaagcggtgatcgggccagagaggaaagagcctatgcaaatctcggtaatgcttacgactcactgggtgactatcgcaaagccattgagtatcatgaaaaagatttgaaaactgcgatagaaattggttatcgggccgaggaaggagcagcctatggaagtctcggtaatgcttaccaggcactgggaaactatcaaaaagccattaattatcatgaaaaagatttgagcattgcaatagaaatcggtgatcaggcgggagaaggagcagcatatggaaatctcggtaatgcttacgactcactgggtgactatctaaaagccattgagtatcatgaaaaagatttaaacattgcacttgaaatcggtgatcgggccggagaaggaggggcctatggaaatctcggtaatgcttacgactcgctgggtgactctcaaaaagccattgagtatcatcgaaaagatttaaaaattgcaatagaaatcggtgatcgggctggggaaggagacgcatatggaaatcttggtaatgcttaccagtcactaggtgattatcaaaaagctattgagtatcatgaaaaacaattgaaaattgcaacagagattggtgatcggggtggagaaggaagagcctatggaaatctcggtaatgcttacgactcactgggtgactctcaaaaagccatcgagtatcatcaaaaagatttaaaatttgcattagaaatcgatgatcgggctggagaaggaggcgcatatggaaatcttggtattgcttaccagtcactgggtgactatcaaaaagctattgagtatcatgaaaaacaattgaaaattgcaacagagattggtgatagagctggagaaggaagagcctatgggaatctcggtaatgcttacgactcactgtgtgactctcaaaaagccattgagtattatgagcaacgattgaagattgcaagagaaatcggtgatagagcaggagaaggaagagcctatggcagttttggtaatgcttaccagtcactgggtgactatcaaaaagccattgagtatcaagaaaaacatttaaaaattgcaacagaaatcggtgatcgcgccggagaaggaggagcctatggaattttcggtaatgttttccagtcactgggtgattatcaaaaagccattgagtatcaagaaaaatatttaaaaattgcgatagaaattggtgatcgggctggaaaaggaggggcctatggaaatcttagtattgcgtacggctcactgggtgactcccgaaaagcgactgagtattaccaaaaacgattgaaacttgtgacttaagtcggtgatcgggccggagaaggaggagcctGAGCTTTCTTGTTTTAGATCTTTCTCTTTAGATGCAGCTATTGCAAAGAAAAAAAAAATGAGTTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011363 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR035994 all species →	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan
IPR052699 all species →	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098 all species →	RAPSYN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009116 all species →	Biological Process	nucleoside metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ayon_s0089.g28.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora yongei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora yongei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →