Detailed information of ayon_s0096.g27.t2 in Acropora yongei

Genomic Location: sc0000096_pilon:394590...513939
NR annotation: XP_044173762.1, LOW QUALITY PROTEIN: nesprin-1-like [Acropora millepora]
Species Acropora yongei · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9QXZ0Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4 OS=Mus musculus OX=10090 GN=Macf1 PE=1 SV=2
Q9UPN3Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4/5 OS=Homo sapiens OX=9606 GN=MACF1 PE=1 SV=4
Q03001Dystonin OS=Homo sapiens OX=9606 GN=DST PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001037 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02187
all species →
GAS2Growth-Arrest-Specific Protein 2 DomainFamilyInterproscan
PF00307
all species →
CHCalponin homology (CH) domainDomainInterproscan
PF17902
all species →
SH3_10SH3 domainDomainInterproscan
PF00435
all species →
SpectrinSpectrin repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018159
all species →
RepeatSpectrin/alpha-actininInterproscan
IPR003108
all species →
DomainGAR domainInterproscan
IPR036534
all species →
Homologous_superfamilyGAR domain superfamilyInterproscan
IPR043197
all species →
FamilyPlakinInterproscan
IPR001715
all species →
DomainCalponin homology domainInterproscan
IPR011992
all species →
Homologous_superfamilyEF-hand domain pairInterproscan
IPR036872
all species →
Homologous_superfamilyCH domain superfamilyInterproscan
IPR018247
all species →
Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR002048
all species →
DomainEF-hand domainInterproscan
IPR041615
all species →
DomainDesmoplakin, SH3 domainInterproscan
IPR001589
all species →
Conserved_siteActinin-type actin-binding domain, conserved siteInterproscan
IPR002017
all species →
RepeatSpectrin repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23169
all species →
ENVOPLAKINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0005198
all species →
Molecular Functionstructural molecule activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005882
all species →
Cellular Componentintermediate filamentInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0042060
all species →
Biological Processwound healingInterproscan
GO:0045104
all species →
Biological Processintermediate filament cytoskeleton organizationInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10382DST; dystonin-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora yongei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora yongei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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