Gene detail

Detailed information of ayon_s0123.g4.t1 in Acropora yongei

Genomic Location: sc0000123_pilon:35396...51047
NR annotation: XP_029203757.2, LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ayon_s0123.g4.t1

ATGCTGTGTAAACGTCACAATCTTCCCATCAGTCGATCATTACTAGAGAAACTTGTTTCAAGATTTGATGTTGATGGAGATGGATGGGTGAACTTGAGGGAGTTTTCAAAATTCCTTGGAAAGGCTGTGTCAGTTGCTGCACTTGGAAATTCTTTAAGCTCCAATGATAGTCTTTCAAACAGAAATCAAAGTAGAACCAGTGCTTCCGGTAAACAACACAGCAGTGTGACTGTTAGTACTGAGACACAGACCAGCTCAGAACCAGAGCCAATCAAACTGACTTTGCGACGCCGTAATGTTTACGTGTATCCCCCGGACATATACAAAGACGCTGACCTGCCATCCCACCCTCCTGAGGAGAGGCTACAGTTGGAATGGGTATATGGCTACCGCGGAAGAGACTGTCGTAGTAACTTGCATTTGCTAAGTTCAGGGGAGATCATTTACTTTATTGCTGCAGTGGTTGTGATCTATGACGAGGAACGTCATCGTCAGCGACATTACACTCAGCACACTGATGACATCAAAAGTTTGTGTGTGCATCCTGATGGAGTAAGGATAGCGTCGGGTCAAGTGAAAGGCCACGGTGATGATGCAAAGCCTCATATCCGAGTATGGAATTCCAACTCCTTAGATACCATTTGTGTGATTGGTGTGGATTATTTTGAAGATGCTGTCTTCGCGCTTGCTTTTTCGAACAAGAAAAGTCAGGGTTCGTATCTCGCATCTGTTGAAGACAATGAATACCATACAATAACTTTGTGGGACTGGACAAGAAAGAAAAAGCTTGCTTCGGCAAGGGGTAACATGGATCAGGTACTGGCCGTCAACTTTTCGCCTTTTAAAAGTCATCACTTTGTCACTTGTGGCAAACAACACGTCACATTCTGGGAATTGGATGACAACAAGTTGAAGCAGTCAAGGGGCAGACTGAGTAAAAATCACAGACCAAAGTACGTGTCCTGCATCGCTTTCTCGGTGAACTGTGACGTTCTCACAGGCGACACAGACGGCAGTATATGTGTGTGGCCGGAAGAATCAAACCAGATTTCCGAGGAGCTCGGTGTTAGGAATGCGCATTCCGACTCAGTCTACGCTCTTCTTGTCCTCCCAAATGATGTCGTGTTGTCTGGAGGAGGTGGCGAATCAACAGTGAGAGCCTGGTACAAAAGGCCTAAACTGATACCAACCAATGTAGAATTAAAGCTACCCAGAGAAGTCAGTGGTGTGCGTTCTTTAGCTTTGGGGCCAGGAAACCAACTTTACATCGGTACAGTGGACAATCACATTTGGGTTGCATCAATGAATGTAGATTTGACATCTCCGCTCAAAGGAGCGGTGGCTAAGTCTGTTATACAGGGCCACTGTCAAGATTTGCGGGGTCTTGCAGCTCATTCCAGTTCTCCTATGTTTGTAACCGGTGGAAGCGATAAGGTCGTGCGGCTTTGGGATGCGGATCAACATCGTGTTGTTTGGACAAACAATAAGTTGGGCTCCGAAATTCAAGCTGCAGCATTTCACCCCTACAGCAGCTTGGTAGCTGTCGGCTTCAAGAAACGAGGCTGGGCGTTGTTGAAAGCATCAACTGGGGAGCTAATCATCAAGCTAACATCTGAGCCACCGGAGAAAATATCCGAAATCCAGTTTTCACCAGATGGAACTCATGTCGCCCTTGGCTGCCACGATAACGATGTGTACATTTATGAACTGCTGAGTGAAGGAAGGTCTGTTTCGCTCAAAGTTCGTTGCAAGGCTCATACAAGCTCTGTTAGTCACCTAGACTGGTCCAAGGATGGAGAAAACCTTCAAAGCACGTCTACAGATTACGAGTTGCTATTTTGGGACGCCTTGCAAGGTGAGCAGATCACAGCATCAGCGAGTCTACGCAATACCGAATGGGACACACACAATTGCGTTTTGGGTTACCCAGTCATTGGAATCTGGCCTGATGGAGCCGACGGTACAGATGTGAATTCTGTCGACCGATCCCACAATAAGCGGCTACTCGCTACAGGGGACGACTTTGGAAACCTCAACCTGTACAGATATCCCTGCGTCAGTGATAAGGCGGAGCCTCGGATCATTAAAGGTCACAGTGCGCATGTCATGAACGTACGATTTCTTTCCGATGACACCCGATTGATCTCCGTAGGCGGTCGCGACGCAAGTACTTTACAATGGAAAATCGTGAGGACTGCGTAA

Transcript

ayon_s0123.g4.t1

TGAAGGCGCGAAACTGAGaatagggagtttaagaagctacgacggcaactgcaacaaaaatgtcacattaaaattgaactttgcgttacgtaaagtgttttgcgattattccatgttggtcacattgtagaaaataggcgaagtacactttcgcttgcttggcacgaatgtttttcatctaacggcaaagaatgaaGTCAAGTATTGCTTAACAATCAGATCTTTATTCTTGGGAAAACACTGACAACACTTGTGAAGAGATTTGAGGCTGATGGAGGAGGTGTACTTCATGAAGCACTGGCAAGATATCTTTTAGATTGCCACTACAAGGATAGGCAAAAGTTAAGTATATTTGGATTATCCAATCCCGTTCGCACAAACACTGGTCAGAGAGTCGACAAGGTAACAGATGCACAGCTCCTTTTGGAAGTTGAAAATCAACTGATGCAAAATGGAGGACACTGGACTTTCAACGAACTTAAAGCTTCTTTTCAGTAATATTATGAGAAAGGAGCAAGAAATGGTCTCATTGATAACAAAGAGTTGAAGATGCTGTGTAAACGTCACAATCTTCCCATCAGTCGATCATTACTAGAGAAACTTGTTTCAAGATTTGATGTTGATGGAGATGGATGGGTGAACTTGAGGGAGTTTTCAAAATTCCTTGGAAAGGCTGTGTCAGTTGCTGCACTTGGAAATTCTTTAAGCTCCAATGATAGTCTTTCAAACAGAAATCAAAGTAGAACCAGTGCTTCCGGTAAACAACACAGCAGTGTGACTGTTAGTACTGAGACACAGACCAGCTCAGAACCAGAGCCAATCAAACTGACTTTGCGACGCCGTAATGTTTACGTGTATCCCCCGGACATATACAAAGACGCTGACCTGCCATCCCACCCTCCTGAGGAGAGGCTACAGTTGGAATGGGTATATGGCTACCGCGGAAGAGACTGTCGTAGTAACTTGCATTTGCTAAGTTCAGGGGAGATCATTTACTTTATTGCTGCAGTGGTTGTGATCTATGACGAGGAACGTCATCGTCAGCGACATTACACTCAGCACACTGATGACATCAAAAGTTTGTGTGTGCATCCTGATGGAGTAAGGATAGCGTCGGGTCAAGTGAAAGGCCACGGTGATGATGCAAAGCCTCATATCCGAGTATGGAATTCCAACTCCTTAGATACCATTTGTGTGATTGGTGTGGATTATTTTGAAGATGCTGTCTTCGCGCTTGCTTTTTCGAACAAGAAAAGTCAGGGTTCGTATCTCGCATCTGTTGAAGACAATGAATACCATACAATAACTTTGTGGGACTGGACAAGAAAGAAAAAGCTTGCTTCGGCAAGGGGTAACATGGATCAGGTACTGGCCGTCAACTTTTCGCCTTTTAAAAGTCATCACTTTGTCACTTGTGGCAAACAACACGTCACATTCTGGGAATTGGATGACAACAAGTTGAAGCAGTCAAGGGGCAGACTGAGTAAAAATCACAGACCAAAGTACGTGTCCTGCATCGCTTTCTCGGTGAACTGTGACGTTCTCACAGGCGACACAGACGGCAGTATATGTGTGTGGCCGGAAGAATCAAACCAGATTTCCGAGGAGCTCGGTGTTAGGAATGCGCATTCCGACTCAGTCTACGCTCTTCTTGTCCTCCCAAATGATGTCGTGTTGTCTGGAGGAGGTGGCGAATCAACAGTGAGAGCCTGGTACAAAAGGCCTAAACTGATACCAACCAATGTAGAATTAAAGCTACCCAGAGAAGTCAGTGGTGTGCGTTCTTTAGCTTTGGGGCCAGGAAACCAACTTTACATCGGTACAGTGGACAATCACATTTGGGTTGCATCAATGAATGTAGATTTGACATCTCCGCTCAAAGGAGCGGTGGCTAAGTCTGTTATACAGGGCCACTGTCAAGATTTGCGGGGTCTTGCAGCTCATTCCAGTTCTCCTATGTTTGTAACCGGTGGAAGCGATAAGGTCGTGCGGCTTTGGGATGCGGATCAACATCGTGTTGTTTGGACAAACAATAAGTTGGGCTCCGAAATTCAAGCTGCAGCATTTCACCCCTACAGCAGCTTGGTAGCTGTCGGCTTCAAGAAACGAGGCTGGGCGTTGTTGAAAGCATCAACTGGGGAGCTAATCATCAAGCTAACATCTGAGCCACCGGAGAAAATATCCGAAATCCAGTTTTCACCAGATGGAACTCATGTCGCCCTTGGCTGCCACGATAACGATGTGTACATTTATGAACTGCTGAGTGAAGGAAGGTCTGTTTCGCTCAAAGTTCGTTGCAAGGCTCATACAAGCTCTGTTAGTCACCTAGACTGGTCCAAGGATGGAGAAAACCTTCAAAGCACGTCTACAGATTACGAGTTGCTATTTTGGGACGCCTTGCAAGGTGAGCAGATCACAGCATCAGCGAGTCTACGCAATACCGAATGGGACACACACAATTGCGTTTTGGGTTACCCAGTCATTGGAATCTGGCCTGATGGAGCCGACGGTACAGATGTGAATTCTGTCGACCGATCCCACAATAAGCGGCTACTCGCTACAGGGGACGACTTTGGAAACCTCAACCTGTACAGATATCCCTGCGTCAGTGATAAGGCGGAGCCTCGGATCATTAAAGGTCACAGTGCGCATGTCATGAACGTACGATTTCTTTCCGATGACACCCGATTGATCTCCGTAGGCGGTCGCGACGCAAGTACTTTACAATGGAAAATCGTGAGGACTGCGTAACTGAGTGGTAGAAGAAAGCTCGGACATTGTTGCAATATCCACGACAAGAGCTTATCCTTGATATCTCACGATGTATTTATTTTAAAGAGAGCACATTGTAAGTTCAAGATTAGGGAGTTAAAAGCAAGAACAATACGACGCTTACCATAGCTTCACTTCAAAAAATCATAACTGCGCAATCACAAGTATTTCGCTATTGTACCTCCTCGTTCAGTTGCAAGGTATTCAGTGTGAAGTATTCGATAATTCGCACGGCTTTGGAGAGAAAGTCAGTTAATATTTTACGGTTCTCATCAAAGCCGCAAACAGCTTGTATTCATGACAGTCAGTTTTTTTACCGACCTGTATCCAGTATCCCAACGCAGTCATAAATACTGCATAAAGAGTGCAAAACCAATGACCATGTACAAATTGCTTCTTTCTTAATCAAGACTTAAACACAACGCAAGTTTCGTGGACTTTTTTGTGTTCCTTTGATGAGACTGAGAAGCACCCATTTTTTTTTAAGAGATTAAAATAGTTTTTCCATA

Protein

Uniprot

Gene family

Uniprot term	Description
Q26613	77 kDa echinoderm microtubule-associated protein OS=Strongylocentrotus purpuratus OX=7668 GN=EMAP PE=2 SV=1
Q9Y1C1	77 kDa echinoderm microtubule-associated protein (Fragment) OS=Lytechinus variegatus OX=7654 GN=EMAP PE=2 SV=1
Q4V8C3	Echinoderm microtubule-associated protein-like 1 OS=Rattus norvegicus OX=10116 GN=Eml1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF03451	HELP	HELP motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR050630	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR005108	Conserved_site	HELP motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0072686	Cellular Component	mitotic spindle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala