Gene detail

Detailed information of ayon_s0150.g3.t1 in Acropora yongei

Genomic Location: sc0000150_pilon:22131...36475
NR annotation: XP_029191461.2, ADP-ribosylation factor GTPase-activating protein 1-like [Acropora millepora]
Species abbreviation AYONG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ayon_s0150.g3.t1

GAGAGGAATTATTAGAGGGTGAAGAAATATGGCAAGTCCAAGAACGCGGCGAGCGTTAAAAGAATTAAAGCCGAAAGAAGACAATAATAGCTGTTTCGAATGTGGCGTACTCAATCCTCAATGGGTCAGTGTGACCTATGGAATATGGATTTGTCTCGAGTGTTCTGGTAAACACCGAGGACTTGGAGTTCATTTAAGTTTTGTAAGATCGGTCACAATGGACAAGTGGAAGGATATTGAATTGGAGAAAATGAAGGTTGGTGGAAACAGCAAGGCCAAAGCCTTCTTTAAATCTCAGCCAGACTTCCGATCAAACATGACTATTCAGGAAAAATACAATAGCAGAGCAGCTGCACTTTATAGGGACAAGATCTCAAGCTTAGCTGAAGGAAAATCGTGGTCTGAAGAAACATCCCCAGCCAGGAATTATGAGACCGGAATGACAAGAAGCACTGGTGTTAATGCTGGTGGTTCTCACTTGTCCAATGGGTCAAAATCCATGTCGCACGGCTCATCGCCAGAAATGATGCTAGGAATATCAAAGCAAGAATTAAATTCACAGAAGGAGGAATTCTTCAATAGAAGACAGAGGGAGAACGCAGCAAGACCTGACAATCTTCCCCCAAGCCAAGGTGGTAGATACGTTGGCTTTGGATCAGCACCAGCACAAACAACCACAGACAATTCAGGCTGGGATGCAGCTTTTTCATCCCTCTCTTTGGGTTGGAGTTCTTTTGCATCAGGAGCTGCCCAGTTTGCAGCAGCAGCCTCACAACAAGCTGTCAAGATTGGTTCCACAGTCAATGAATCAGTCATCAAACCAACAGCAAGCAAGGCTGTTGAGCTTGGAGCTTCTATGAATGAAGGTGTAAAGAAAGTTTCAACCAGGGTACAAGAAGGCAAGCTCATGGATGACATGTCCAGTTCAATGTCTACTCTTTCCACCAAGATGAAAGATGCCAGTAGCAAAGGGTGGTCTAATATTCAAACAGCAAGCATGAAAGGATGGGCAAATATCCAAACCCTTGTGAATCAGGGAAGTGAGTATGGATCAAAGTCTCTCACAGGTGGTAGAAACTTTGGAGGAGGCTATGGTGCTGTCAATGGCACCTCGTCAATCAGTAATGATGCAGGAAACAGTTCGCAAAACTGGGACTGGGACAACTATGCTGAAATCAAGGGAGAAGAAGATGGAAGTGACGGCCATGAACCAAACCGAGACATTGGCAATGAGGATAATACCGAGGCAGAATCATGGGCCTGGGGAAGTGATTTTGAAAGTGCACCTGAAAAATCATCAGCTTCTTCTGTAAGAAATGGTTCCTCAGAGTATGCAGAGAAATCCTCAAAGGCAGCCACTGCTGTGAAATCAAAGCCTAAAGCTGTGAACAGACAGAGCAGTGATGGCTGGGGGGATTTGATTAGCTGGGATAACGATGACTGGGGAGAGTCAAGTGGGTGGAGTAATGAAGATTGGAAGAATAACGGTGAAACATCCAAAACAGCCTCCGCTGGGAAAGCAGGAGAGAAAGCTGATTGAACTTGCGCAAATAATTATTTATTTGACCCAAAGCAAACATTGCAAATAATGAACAGAAATCTTGGCAATTTGAAGGAAGCAGCCTTGTACCTTTGCCTTTCATGATGGTCTGGGTGACTATTGTGGCAATATTTTTGATTTACGAGGCAAAACAACTGAAAATGTGCAATTTAAGAAAAGTGTTATCTTTTATCAAACATTTTGTGCTACACAAAAGCACACTGTAGAACTCACTACAAAATTCGAAGCACATTGCTGGGGGGATAATACACATTGCACGGTAGATGTAAGAATGGTCTTGGTGATGATTTTTTTGCAGTATTTGTTAATAATAAGGAAAAGTGAATGGTGATATGTTGCTTGCATTGTATAGTTTTGTCAACTTCATCAAAAATTTATCAAGGAATAACAATGATTCTGTATTTTTCTTTGAAATTAATTCTTTCTATCTGCTCACTACTATCAGACTTGTTCACTATCTATGACAAAAATTATGGCCGGGTCAAATGAAGCCACCTGGTTAAAAGGAGATGAAGACATGGCAAAATGTTTGCACTAATCTGCATTGAAAGAAAGGGTCATTGGAGTAATGACTTACTCTTACTCtcaatatttaataaaatttattattatatggcaaacccagtcttaggcaaatccctgtgctctgattggttctttctagaagaaaataaaaagattgaaattttccgaaatttcaaagatagatggagaagacaaacatttttaagtgcaagccaccggaagtgcatttcattataagagacagtgccatataataaactacttactaacctagcttgctcgagccgtacggtggaatattggccctctgtcattttcgtacggacctcgcttcgctcggtccgtactgccacaacctcgggccaatattccccagtacgtcccttgcgctcggttagtaagaggttaatattGTCGATCTTTAAGAGATGGTGTCTATGTCCAGGAGGAGGAAATCAGGACCTTCATATGGTTTGACTGTTAAACTTTCTCAAAAGACATCTTTTTGTCTGTCACAAACATGGAAAGAGCACTTCAATCCCTCTAATGAAAAGCAAAACTGGCGAAGAAACGTGAGTTTAGGAATGCTGTTCTACAATAGGAGGAATTGGGCATGGGAAAAACAGTTAACTGGTATCCTATGTCATACTAGAAATTAATTTCATTGCCCCTTTTACAACCAAAGCCAGCAAGGGAAAAAACCTGAATTGAGCTAAACAAGTTTCAATGCTGATTGCCGTGTCCTGGATAAATTTGCTCAAGTTGTCTTACCCTGGGTGCAAGAAGGCTCAAGTGACAATAAGGCAATTTCAAATATGCTTGCAACAAGAACACTTGTGTAAACTTTAATTAATATTGTCAACACTCTTATTACTGGTATGTACAAAATATTCATTAACTGTTATCTTTCTCCCAGTTGTGCCCTCAATTTTTAGTGTCATAAAAAACCATTAAATGGTTTTTTATGACACTAAAAATTTTGAAAGTAATGGCCTTAACAAAAGATCATAAACTTTCAAATGAAAATGGGATTATGAAGGGGGAAGTTTTTGTGACAATTTTCTTATGCTTAGAACAGGCTAGAGTAGACACATTGCATGAATCCAAACAATATTGAAATAACAGAATATGTATAAGCCTTGCCGTTTGCATTGAGGAGCATGAAAGATAAACAAGCGGGACTTGAAACATACACTTTCAAATAGTGAAACCAATACAGTGCTAGAATAATCACGATTATCTATGGTGACAATAATTATTGTTAATTAAATATTGTTGTCATTTTTGCAAAGGGTGTCCATGCAGCTGAATTTCGTTCAACACTAAGATGACAGCCTGAGCTAATCAATGTTTAAAAATTGTTATTAAGACATCAATTGCACCAAAAGGCCTGCAAAAATGTCATCAAACTGTATTACTTAGTCTGTTAACCAACAGATCATCCACAAAATAACAGTATGACCAAATGCTGTATCACTGTTCCACCTTTTACCAATACAGCGTCTTGCTGAAGAATGTTGTTACACTAGAGAACCAGCCATTTTCCTTATCGTCACTTCCAACCTTCTTGATTGCCTGAAATCCAGATCCAAAGAAATGATAATAAATTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N6T3	ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=ARFGAP1 PE=1 SV=2
Q9EPJ9	ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus OX=10090 GN=Arfgap1 PE=1 SV=2
Q62848	ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus OX=10116 GN=Arfgap1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005200 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46395 all species →	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0030100 all species →	Biological Process	regulation of endocytosis	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12492	ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.