Gene detail

Detailed information of c0001.g033.t1 in Palythoa umbrosa

Genomic Location: c0001:541816...542493
NR annotation: XP_020618528.1, transcription factor sox-2-like [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q20201	Transcription factor sox-3 OS=Caenorhabditis elegans OX=6239 GN=sox-3 PE=2 SV=1
Q9W7R5	Transcription factor SOX-21 OS=Gallus gallus OX=9031 GN=SOX21 PE=2 SV=1
Q7SZS1	Transcription factor Sox-21-A OS=Danio rerio OX=7955 GN=sox21a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09267	SOX1S; transcription factor SOX1/3/14/21 (SOX group B)	-	Transcription factors	ko03000	deepkoala