Gene detail

Detailed information of c0005.g020.t2 in Palythoa umbrosa

Genomic Location: c0005:217655...224499
NR annotation: XP_020623605.1, hemicentin-2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0005.g020.t2

ATGGCGGGTATCAAAGAATCTCCGTCCAAGTTGCATCACATACTAACCGTCACGAACCTCTTGTTTCTGGTCGTCTCAGTTTCTCTACTAACCTACAAGGACTATAGACTTGAGAAGATGATCGCTGGTAAGGCGACGGAAGAGAATCTACTGAAACTACAAAGAGATGTGTTGGCTCGCCTGAAGAGACTTGAGAACCGTCCTACGAGTGATATCCACGGAGAGATGAAAACGAGTCGTAGAAAGAGACACGATGCATCTTATACAACTGTTCTTACTGCTACTTGTCTTCAGTTTATTTTTTCTGATGGACCTAAGGCACGACAAAATAAAACAAGAAAAGTACTCTGCGTTCCAGGTCCAAGAGGGCCCCCAGGTCCCATGGGGCTCCaaggaccacaaggaccctctggtgacgtaggactgcaaggaccacaaggaccccctggaactcgaggccgtcgaggtaggagaggacgtccaggaaagattggtcctcaaggaccaccgggtAAAGTGGTGTATTTGCCACCATCGACGGTAAAACCTTCGCAGTCGTCTGCACCAACAACGACAAACTTTCCAACCACTGGACCACATTATAAGAAAGACAAACAAATCACAAGTCTTGTACCAAACACGATTCGTGACCTAGTGAGACCCCGATTCGACTCAAGTCCATCCTCAGTCAGTGCCCGAGAGGGAGAAAACGTAACAATCCCCTGTAATGCTACCGGATATCCTACTCCCCGTATAACGTGGAGTAAAGACGGCACAAACTTGATCAGCAGTCGAAGGTATCTCCTCGCTGGATCAGAGTTGTCTATCGTGGGCGTAGTGTTTGAGGATCAGGGATTCTTTCATTGCAGTGCTGAGAATTTGTTCGAGCAAACGAACCGCTCCACAAATCTCATCGTTTATGGACCTCCAAGGTTTGTCGTGCCTCCTCCCCGTCGCGTGATTGGCTATAAAAACAGGCGGTCCACCCTCCCGTGTAAAGCGATTGGTTATCCTGTCCCTACCGTCTCCTGGCGACGGACACATGGCCAACCTCTACCCCAGGGGCGAAACAGACTTACAAACGACGCACTTAAAATCTTCAACACGTCAGACCAGGATGCTGGTATTTACATATGTAAAGTCTCCAGTGAACTGGGTTCAAGGATTGTGGCGACTTTCCTTGTTGTTGAAAACGTTGTGCCTCCCAGTTTTACAGTTTCCCTACCATCTCAGTATAACGTAACACGTGTTAACGATTCAGTGAACATCACGTGTGAAGCGAAAGGTGCTCCTAAACCTACAGTCACGTGGTACAAGAATGACGTCatcatcagcaCCAAGACATTTAATCGTGGACCCAGACAAAACAGCGAACTTTTAATAAAGAACTTCAAACGAGAGGATGAGGGAATGTACAAATGTGTGGCTACAAATGAGTATGGAAATGCGGTGGAGGCAAGAATAAATATAGTGCTGGTGAAATGTGATGACCCAGGCACTCCGTCCAATGGATTCAAGATCGGTAGCACGTACAAGGTCGGTGACGTGGTGATGTTCACCTGTAGCAAGGGCTTTACACTTATAGGATCACCGCTGACTGTCTGTTCTGCCAGCGGTACCTGGAGTTCATCGTTACCTTTGTGTGTTCCTCCTGATTACCTTGCTCCCGTTGAATGTATCCATCACACCGTTATAAACGAGCCAAACCGCAATGTGGGGTATGGGTTTAAAACACACCGGTGTGACAAGCAGCTCACTGATGGATGGTACCGCTTTGCTGGAGCTGCGGGCTCACGTATCAACACAGTCTGCAGAGGAGAGCACACTTGTGACACAGATCGGGTAGGTTGGATGAAAGATTCACATCCTAAAGTATCAGACGGACTGGTCTCCCGCGAAGTTTGTTTTGGATCAACCGGCAAAGGATGTTGTCAGAGTGGATACACAGAGACGaTACACGTGCGGAACTGTGGATCCTATTACGTGTACAGACTGACTCCAACGAACGGTTGCAATCTTCGCTACTGTGGTGTGTAG

Transcript

c0005.g020.t2

Protein

Uniprot

Uniprot term	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043005	Cellular Component	neuron projection	Interproscan