Gene detail

Detailed information of c0006.g040.t1.p1 in Palythoa mizigama

Genomic Location: not available for this species
NR annotation: XP_020620700.1, protein lin-9 homolog isoform X2 [Orbicella faveolata]
Species abbreviation PMIZI · all data for this species · gene families

Sequence

No sequence record for c0006.g040.t1.p1 in PMIZI (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TKA1	Protein lin-9 homolog OS=Homo sapiens OX=9606 GN=LIN9 PE=1 SV=1
Q4R8N2	Protein lin-9 homolog OS=Macaca fascicularis OX=9541 GN=LIN9 PE=2 SV=1
Q8C735	Protein lin-9 homolog OS=Mus musculus OX=10090 GN=Lin9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005745 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06584 all species →	DIRP	DIRP	Family	Interproscan
PF19438 all species →	LIN9_C	LIN9 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033471 all species →	Domain	DIRP domain	Interproscan
IPR045831 all species →	Domain	LIN-9, C-terminal	Interproscan
IPR010561 all species →	Family	Protein LIN-9/Protein ALWAYS EARLY	Interproscan
IPR036728 all species →	Homologous_superfamily	Pheromone/general odorant binding protein superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21689 all species →	LIN-9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000003 all species →	Biological Process	obsolete reproduction	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0017053 all species →	Cellular Component	transcription repressor complex	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0005549 all species →	Molecular Function	odorant binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21773	LIN9; protein lin-9	-	Cellular senescence	ko04218	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.