Gene detail

Detailed information of c0006.g072.t2 in Palythoa umbrosa

Genomic Location: c0006:759772...784364
NR annotation: XP_031556383.1, uncharacterized protein LOC116293127 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0006.g072.t2

ATGGCTGCTAGAGGAATATCACGGTTTTACCTCGTGTTCTACAATGGTGTACAGGCGTTGGGATGGCTCATCATTTTAGTTCTTGGAATAAAACATCTTGTTGCAAATCAAACCCATGTGGGGATATATTCCTCAGTGGAACTGCCATTGAAGGTTTTCCAAACAGCAGCAATATTAGAAGTGATCCACTGTGCAGTAGGTTTAGTCCCATCGTCAGTCATGTTGACAGCTTTTCAAGTCAGTTCTCGTGTCTTTGTGACTTGGGCAATAGCGCACAGTGTTCAGCCTGGAGAATTACTGAGTATCTACGCCGCTCTGCCTCATGTGCGTGACTCCGGGCTATACAGCGTGGTTATGCCCAATCAAGCCAATATTGCCTTTAACTACTATTACTTCCTAATATTTATCATGGCGATCTACATTCCAAGATTTCAGTATGGCAAAGCACAGATCACCAGCTCTACTCCCGAGGGATACTACTGCAAGTCTGTGACTTTCCCCACTACATTCTCTGGTAGGAGCAAAGTGCGAGTCTTTGTATCTGTCAATCACGGTGACGTCAGCACAAAGGTTCATGACGTCACATTCCCATGGGTGAATGCTGTGACGAATAGTGGGTTTAGAGTGTGTATGGTAGAGAGTGGCCTGGGTTCAGAAGGTAACGCCACGATAGACTGGGTCGCTATACAAGGAAGTTTCCCAGGGGTCACTCAGGGAACTTACAGATTCTCCGGTGTTTGGACAACAGGATCGCAATGCAAACGTGTCACGCTATCACAGGCTTTTGCTTCAAAACCTTTTGTGCTTGCAACTGCACGTCACACACGACATAACAGAAAACAAGATGCTATGGCTTTGTGGCTTGAGGGAATCGAACAAGATGAATTTAGCATTTGCCTGAGGGAAGCAAGACTCTTTGATGGAAAACACCAGGATATTGAAGTGGAATGGATAGCTTTTACAAAACCTCCATCGACCTGGTCCACTCAAGAACACAATAAAGTGGAGTTTCCTAATGATTTTCTACCTTCTGAAGATGACAATTATGCATTCTGCAAGGTGGTACAGTTCAAGAAACCGTTCTTCAAACCGCCTGTGATTACCACTACACCAAGTCACAAGTACGATCGTCgtaacgccAACTCCGTAACGCCAGAGTGTAATGCAATCAGTTCCTGGATTGAGGATGTAAGTAGAACCGCTTTCAAGATGTGCGTTAAGGATCTTGTGGGTCTTAACAGCAAGAATCATCCCATTACCGTGAGTTATATGGTAACTGGAGCATTGGACCCTTGTATCAATGTTTCTTGCACCCACTTCGCTTTgtgcaaagctttcgctcccgatgacgcccagtgtgtgtgcattgatagatgtccatcctacgaagagcccgtatgttctacgagtggagaaacgtttgacaacttgtgcttactgaaacagcgcgtgtgtaggattaggggtaacttcaccTACTACCATCCGGGCAACTGCATGGGGTTCCCAGTGCAAAAAGGAACAAGGGATTTATCGAAACTGTCTTCCCGGTCCGAAACGGAGTGTGCGATGATTTCTCTTGAGCCATACACCTTTTACCCTGACAAGAAAGTTCACGTCCAACTAACTCTTAATCATAAGAACGCTTCAAACAGCCTGGATGTTCACGATGCACCAGTTTACTGGGTTGAAAATGTCAGCGATCAAAATTTTACTGCTTGTGTGACGAAGGCTGGAAGAAACGACCGCCGAGTTTCCGGATTGTCATCGATAGACTGGTTGGCATACCAAGGTGCCCCCAGGGGAGGGGTCAGCGGAGCAGAAGAGTTCAGCCGCTGGTGGACTGGGACTACTTGCAAACTGGTTACTCTCCCCAGTGGAAAATTTAACAGCCCGCCAACCATCCTTGTTACACCTGAACATTTCCGCacgggattaaaacacgatgctgctactgcgtggacacaagatgtcactagaaactctttcaaaatttgtctgagagagttacagaattttgatggcgtccatgaagatattcatgtgGGCTGGCTAGCATTTGATGTACTACACCGTCCATTGTTCTCCGAACATGGTAAGATACACCTGGCTAACGGAAACCTTCCATTGAAGAAGGATAATTACGCATTTTGCAAGAATGTGCAGTTTTCGAAGAATCACACAAAGTCCCCGGTAATTCTCTTAACAGCCAGTCACAATTCAGGCAGAGGTCGCCTGAGTCCAGATTACAATGCAGTCACAACTTGGGTTGAGGGTATCAGCCGTAACGGATTTCGCACATGCGCAAAGCTACTGTATGTGACGCGATATGATCCACTGACTCTTCACTACGCAGTTTTGTCAGATGTGTGTGGCAAGGACTGGAAATATTTCAACGGTTACTGTTATCGTACGATTGACAACTGCGAGTCGTGGCACTCAGCCCAAGGCATGTGCAGAGATTTGTCTTCAAACCTGTCCAGTATTCATAACCAAGAGGAGAATGTCTTTGTACAGCATCGCCACAACGCAGGGCAAGGTTGGATCGGGTTAAACGACATCTCTAGTGAGGGAAACTTTTCCTGGTCAGATAAGAGTGGAGCTAATTTTACTTTCTGGGCGAAGAACCAACCGAACAATTTGAAAAACCAGGATTGTGTACATACTCTCGGAAAAAGCTTGGAGCACGCTTATCAGTGGAACGATGTCTCTTGCTCAGATTGTCACAACTTCACTTGTAAACAAGACTACAATGAATGTGAAGAAACGGAACATGAATGCGATCCCATTTCAAAATGCGTCAACATACGCGGTTCGTACACGTGTCAATGTCCTATTGGTTACGTACTGGATGGCTTTACTTGTCAAGatatagacgagtgtaacgattccagcacctgtcatgtgaacgcacagtgtgtcaacacaccaggttcattcacttgcacgtgcaatggcggctactcaggagatgggaaaacttgcgttgaccaggacgaatgcatcaatgggacacatggttgccatagcaacgccaagtgtatcaatactgccggttcatacacctgtaaatgtaacatcggtcacgctgggagcggcttcacttgtacagatgtaaacgagtgtggaggttcccacggctgccactccaacgcccaatgtatcaacacTCCTGGTTCGTTCATCTGTAGATGTAACTCGGGGTTCACTGGAAATGGATCATCATGCGTAGCTATAGTCGACTGTGCCATTGCTCCCTCCCTCGGAGCTGCATATGGTGGTAAATTGCCCAACCCTAGTTTCTCGGCCTCGTCAACTTACCCTGGATACTATCCCAAAGACGGGAGACTAAACGGCAATCGTCACTGTTGGGTGGCGAACTCTTGGAACAGCGACCCGAAGGAGTATCTTCAAATCGATCTTGGAAGGGTGACAAAAATTTGTGCTGTGGCCACACAAGGTTCTTATTGCTGTCAAGAATGGGTTAAGACATATAAACTGAAGACATCTCTAGACAACATCAACTGGGGtttttatagagagAGTGGTACTGTTAAGGTGTTTAACGGTAATGTCGACAACAGCTCCATTGTGAAGCGCAAGTTTCTGACGTTTGTCAGAGCTCGATATATTAGAATCATCCCTATTAGTTTTTATAGGTATAAATGCATGAGGGTGGATCTTTACGGATTTTGA

Transcript

c0006.g072.t2

Protein

Uniprot

Uniprot term	Description
Q6Y1H2	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Homo sapiens OX=9606 GN=HACD2 PE=1 SV=1
Q5RBK3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Pongo abelii OX=9601 GN=HACD2 PE=2 SV=1
Q9D3B1	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Mus musculus OX=10090 GN=Hacd2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04387	PTPLA	Protein tyrosine phosphatase-like protein, PTPLA	Family	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350	Domain	Kazal domain	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR007482	Family	Protein-tyrosine phosphatase-like, PTPLA	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan