Gene detail

Detailed information of c0006.g078.t1 in Palythoa umbrosa

Genomic Location: c0006:840821...847512
NR annotation: XP_048579246.1, uncharacterized protein LOC5521276 isoform X5 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0006.g078.t1

ATGCTCCGCCATTTCTTTGCTCTAACAAACTGTCTAAATTGGAGTATTCTTGTTATATCACTAGCTTTTCTGTCTGAAGGATTTTACTCTGGCTGCAAAGAGGCaaccacagatggcgaatgctgtgtattccctttcaaatacaaggacaaagattacTATGAGTGCTCTAAACTCGACCATCCTGTTGAATGGTGCGCTACAACTGAACATTTCGATACAGTTAAGAAATGGGGAAACTGTTCAGGCCAAAGACGAGTTTTTCCACTGAACGAGCAATACAGGAATCGAGAGATGGACGGAACCGAGCCGCACTCCAGAATCAACGGCACAACTCTAGCCGAGGGGCCCTGGCTTCGAAAAAATTGGTCACAACAACTAGATAAATCTTCAATTCATAGTTACATCCAGTTTGAGGTTTGGCAAAGAGAAAAAAACAATGATTTTACAATATTAGCGTGGTTGTACATTGCCACTGGAAGTTCTTCCCAAATTAGCAAGCCAGAGAGCCTGGGTCTTATTATGGACTTAGGGAAGGTGGAAGGCGGACTCAAATCTAAAGCAGCCTTAACATTGCGATTTGTGCCGAAGCTCCCTCCATCAAAAAAGGTACTTGCTTACAATGGCTTACAACAAAATGTATGGAATTTCGTTGGACTCACTTTTAATCAAAAGAAGTCCTTGTCAACAATGTGGGTTAATGGTCAGCCCGTTGCATCGATGAAAGCCACGATTTACGAATTGGTCTTTTTAGAACGGCTGTTATGGATCGGAAGTAAAATTGACAACGCTGATTCTCCGCACCTGAAAATGCGTGTCTCCTGTGTACAATTCTTTACTGCAACCTTGACCAGGGAGGCGATGACAAGAACAAAATTTGTTTGCAAAGATGAAACTTTAAGAATTTGTGACGGCAACAGCAGCACACTCACATGTAACGTACCAGGGAAGCAGATTCATGTTTtcgcagcaaactatggctttgcatatcgtaccaaagcaTGCAACGGCATTTCCTACCGAAGCACATGTGTTGCGAAGAACTCCCTGGCAGCTGTTCGACGGCACTGCGAAGGCAAACAAACCTGTTTGCTTCATGCACCGCCAGGCAGCTGGTTCGGTTTTCCTGATCCATGCGAAGGAAAAGTTAAGTATTTCGAGGTGCAGTACACATGTCAACCAGCTTTACCACTTGCACCTAAACTGCGAATGGTGGTAGATGTAACTGCTGATTCAGCATTATTACTATGGGAAAGTCCCAAACGTGGTGGCGCAGACATACTGCAGTATAACATTCAGGTTTATGGGTTGAAGTTCTACATGATATTCGTGTCACTAGGAAACACAACGTATTTAAAGCTAGAAAAACTGCAGCATCATAAAAAATACTTTGTGACGATCAGAGCAGTCAGTTCAGCGGGGACTGGTCCTCCAAGCGCAGTGGGCACGTTTAATACATTACAAAGGCAAAACACCAGCATTCGTATAACAAAACGtgatggtaatgaagatgatgacatgttgacgatgatggcgatgatgatttatgatgatgatgatgatgatgatgatgatgatgatcatggtgataatggcgatgacgattatgatgatgatgatgatgatggtgataatgatgatgatgatgatggtAATGATAGAACGTTTATTCCTGACACAGATGACGTACGAGTAGAAATGTTTCCGTACATCGTTACCCTGCAAGCGATTGTAATTATTCTGCTAGCAGCAAAGGTTATTGCAGATTACATCAGCAAACGTCGTCGAGTAAAACAAATCTCCAACGACATACAGACCATTCCAGTTGTTCAGCTCAACGAAAACGAAATCTCAAAATACCAGGAGGTAGATGGCCCCTCAAAGCTTGAAGATCTGAAGGACAGAGCATCTTATTACTCGGCCGACTTTAAAGAACTGACCATCGATTCTGATCATGAAGGAAGTGTGTATGAAGAGATTCCACACAACTGCTACGATAAAGTTAAAGATGAAATAATAAATGATGAACGCGACACTGTGTATCTCGAGGTCATCGCCTAA

Transcript

c0006.g078.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00040	fn2	Fibronectin type II domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036943	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR000562	Domain	Fibronectin type II domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46780	PROTEIN EVA-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan