Gene detail

Detailed information of c0007.g027.t1 in Palythoa umbrosa

Genomic Location: c0007:429215...449869
NR annotation: XP_028411052.1, E3 ubiquitin-protein ligase HACE1-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0007.g027.t1

ATGGAGCGTCTTCAGAGGCTTGCTCGCTCTTTGAAAACAGCAAGAACTGTGGAACTTCCGAAAGATGATGAATCAGCTTCCTATGTTCTGTGTCCAATGATCATGCAGAATCAACACAGGGCTGTTGCTGAACTTCTGTCAAGTTCTTCATACAATGTAAATCACATGTTTGGCAGGGCTCAACGAAGTTTGTTACACATTGCAGCCAATGTTGGTGCTTATGAGTGTTTGGTCCTGTTGCTGAGAAAGAAAGCTGATGTGAACTGTCAGGACATTTCTGGAGTGACTCCACTGCAGTTGGCTGCTAGAAATGGtaaagGGAAATGCATTCAAAAACTATTGGAATGTAAAGCAGATATTCATCTCAGGAACAAGGAGGGAATGACAGCTATTCACTGGCTTGCGTCCAATGGTAGAACTGAACTTTTGGGTGAACTTTTACAAAACAAGGATGATATTGATGTTGAGGACTCACAGGGGCAAACAGCACTCCATGTTGCATGTCTTAACGGGCACACAGTTACAGTGTCCTATCTGTTAGAAAAAAATGCTGACATTGAAAACCAAGACTACAGAGGATGTACCCCTCTCTTCTTTGCTTGCCGTCATGGTCATGTGGACTGCGTCCGAGTGCTACTGACTCGCGGAGCTACTCTTGTTAGCAATCATGATGGAGTGTCGCCTCTAGAAATCTGTGTAAAGGGAGGGTATGAGGAGGTTTGTCATCTGTTGATTGGGACGTTTCCTCACTTACTTACACCCTTACTGAAACTCGCTCAGAATCAGGACTATGAGGAAAGCAAGGTTCTGAAGATAGTGAGATTCCTTTGTGAGAGCAATAATGGGTTGAACGCTAAAATTCTGATGAGTCTTGCAGAGATGGCCAATCAAGCTGGGCTTGTATTGTTGAGTATCTCCAGCAACTACGAAGACTCGATGGTGAATTTTTTACGTATTATTCGTATCTTGTGCAAACTGTGTACCACGCTAGAAGAGCAGTCCCGTAACCGTATAGATAGCTGTAGCAGCGTCTCGAGCCGTCGATCACGTGTTGACAGTGCAAGTAACATGTTGAAAGCAGCATTTGGTACAAAACCAAGTGGCAGTGGTAGTGCCTCTGCTAACAACGAGATTGAAGGCCCACCTCCAGATGTATTTGGCCCCCTTGAACAACTCTGGCACGCTCTGGAGGTTTGGTTTTCTTTGTTAGCTGCGGAAATTCAGGAGGAGGAAAATGAAGGAAACAGTAAACTGATGGAAGAAACCGAGCaaagtgaagagaacagTGCTTCTGTAGTGGAGCAAGCAAGTGCTAACCAGACTGCCACAGCTGATGTTGGAGACGAAAGTACTGAGCCAAAAATCTCTGATCCTTCGTTGTCAACTCGGGTTCCGTGTACCCAGTCATCTGACTTTGTCCATGATTCTGATCAAAGAGTTCCATCCGAATCTCCTGGTGCAGCTTCGACACCACCAAGTGTACCAGATGGTACTCTATCAGAGAAACAACAAAATGATACCCAGGGAGAGTCATATGGTGTGAACCAAGCATCCTGTGCACTTGCCTCTGACTCCCGATCTGCGTCAATAAAATCTGAGAACGGTGGGTTAGTGCGGCAACACTCGCGTCACATTGCTGCAGCGCTAATGGCGACCAGACCAAAGATAGCTCAACGCACTTTGTCCCTGAGTCCAGGAAATGATAGCATTCGCTTGAGTCAACCAGCAGTGGAGATGAATTTAGGACGTTGGAGTGGAGACTTTGCAAGGGGTTGGGGTAACTTTACGAGCATCGATAATCCATCAACCGTTGTCACTGCTGAGGAAGTGAATGGCGTTCATGAAACGAGTTTGGCCGATTCTCCGCCAGAGCATGGGCAATCCTTAAATTTGGGAAGGGAGCAAATACTCGGGGCAAGAGCTGAATTAACAATGCGTCCGATTCCCCCTATTCCCATGCCGAGTATTTCACACGAAAACATGGTGCCTGGTCAACCTTTTACACCCGAAACTGAAGTCTTTAGCAGTGATAATTCCCTACACGGAAGGCGAGCTGGCGTCGGAGGTGATCTCTCCCCAGATCACTTTCGTCAACAAAGAGAAGCTGGGCACTGTTCTGATAGTGATTCAAATGAATTAGAAAATGTTCCTGTAGAGAAAAAATGTTGTTCTGTTTCTCCGGTCCCTGGAGGAGACGTAGTGTCGATGACAGCAGAGAGGCTATGCGCTGTTACACGTGGATTCTATCTGTGTTGCTGCTGTCAAAACCAGTGGAAGTTGCAGGAAGACAGGAGAAACTTTTCTTTGCGGTTTATGCAGTTCGTCGATAAACACGAAGAGGTTCTTCAGGTTTTTGTGGCGAGGAACCCAAAGATTCTGTTCTCTCATTTCCATTTCCTGCTGGACAGCCCTCTGCTGATGCAGAAATTCATTCATATCATCCTCGATCAGCCATTTGAGGAAAGACAAAGCTGGTTTTATGAAAATCTCTATGGCAAAAGAACAGAAAGAGAACCAATTTACGACGTGGAGAAGAATGTTGTTGAGGTCAAACGAGATGCCATATTTACTGAAAGCTGCGAGCTGCTGTCTAAATTGAGCAGCGATCTTTTGAAGCAGAATATTGTTGTAAGATTTGAAGGCGAAAGTGGTGTGGGTCGAGGAATTCTACGAGAGTGGCTAGATCTGTTGTCGAGGGAAATCCTCAATCCCGACTTCGCCTTGTTCACGCAATCAGCAGATGGCACGGTATTTCAACCCAATAGTGCTTCCGCCATCAACCCAGACCATCTAAACTACTTCCGCTTTACTGGTCGTATCATTGGCCTCGCCCTGTACCACAAGCAGACCCTCAACGTGTATTTCACCCGCTCGTTCTACAAACACATTCTTGGCATCCCTGTCAGTTACCAAGATGTTACATCAATCGATCCAGAATACGCCAAGAACTTACAGTGGATTCTTGACAACTCCATTGAAGATCTTGGGTTCGATCTCACGTTCTCGGTGGAGACTGACGTGTTTGGTGCCATGCAGGAGGTGGAGCTGAAACCTGATGGGGGCAAGATACTGGTCACGGACGAGAACAAGCAAGAGTACGTTCAGCTTGTAGCTGATCTGCGCATGACCCGTGCCATCAGACCGCAGATACTCAGTTTCTTAGATGGGTTTCACGAGTTTATACCGCATTCACTGGTTTCCCTGTTCAACGAATATGAACTGGAGCTACTTCTATCTGGTATGCCAGAAGTGGATGTGGATGACTGGGAACGAAACACGACCTACATGAGTGGTTACTCAGCGGACTCGCAAGTCATTAAGTGGTTTTGGTCTGTTGTACGTTCAATTACCCAGAAGGATCGAGTAGCGCTTCTACAGTTTGCAACCGGAAGTTCCCGCGTTCCACTAGGTGGATTTAGCATGCTCAGCGGTGGAAGTGAGCCACAGTTGTTTTGTATCGCCCGTATGGAAAATTCTACCCGGCTGTTACCCACAGCAAGCACGTGTTTCAACCTTCTAAAACTGCCCGAATATCAAAGCGAAAAGGAATTAAGAGGGCAACTGCTTTTGGCCGTGCGATGGGGAAGTCTGGGATTTGAGTTCGCATAG

Transcript

c0007.g027.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q28BK1	E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis OX=8364 GN=hace1 PE=2 SV=1
F1N6G5	E3 ubiquitin-protein ligase HACE1 OS=Bos taurus OX=9913 GN=HACE1 PE=3 SV=3
Q8IYU2	E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens OX=9606 GN=HACE1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050409	Family	E3 ubiquitin-protein ligase	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR000569	Domain	HECT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11254	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007030	Biological Process	Golgi organization	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061025	Biological Process	membrane fusion	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12166	HACE1; E3 ubiquitin-protein ligase HACE1	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala