Gene detail

Detailed information of c0027.g014.t1 in Palythoa umbrosa

Genomic Location: c0027:268693...273153
NR annotation: KAJ7374671.1, Pre-mRNA-splicing factor [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q54PH5	Pre-mRNA-splicing factor cwc2 OS=Dictyostelium discoideum OX=44689 GN=cwc2 PE=3 SV=1
P87126	Pre-mRNA-splicing factor cwf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf2 PE=1 SV=2
Q6T412	Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans OX=5022 GN=CWC2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16131	Torus	Torus domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR032297	Domain	Torus domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR034181	Domain	Pre-mRNA-splicing factor Cwc2, RNA recognition motif	Interproscan
IPR039171	Family	Pre-mRNA-splicing factor Cwc2/Slt11	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14089	PRE-MRNA-SPLICING FACTOR RBM22	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0017070	Molecular Function	U6 snRNA binding	Interproscan
GO:0036002	Molecular Function	pre-mRNA binding	Interproscan
GO:0071006	Cellular Component	U2-type catalytic step 1 spliceosome	Interproscan
GO:0071007	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27398	CWC2; pre-mRNA-splicing factor CWC2	-	Spliceosome	ko03041	deepkoala