Gene detail

Detailed information of c0035.g008.t1 in Palythoa umbrosa

Genomic Location: c0035:172321...179787
NR annotation: CAH3136062.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0035.g008.t1

ATGGCTTCACTTGTTCAAGAAAACGTTCGCGAGGTAGCTGTTATTaatgttactgacaatgaaagtgaagaggaaaacgaaaCAAGATCGACTAGTCATAACGAACATGAAAGATCTGAAGTAGAACAACCATATCGCTCCAGCTTGAATGCAAACGATTCCGAGAATGAACATGAACAAATGGAAATCGATTCTTTTGGTACGAGTCAAACAGAGACTGCTAGTAATCCAGTAGTTAATGTGCAAACCAACGAACCCAATTGCACGGAAGAACAAAGGCAACTCGAATCACTGGAGTCAACGTCTACACCACAAGTTAACCGCGCTACTCATCAACTGTTTAACCAAGCACGAGATTCTCCGGAGGAATTTCAAGAAAAgaaaggaaagaaagcatCTAAATCTTCTCCAAAGAATCGACAACCACTCTCTCCCGAGAAAGATGATGATGCACAGAGCTGCCCTATCTGTTTTGAAGCATGGACCAACTCAGGAGGTCACCGGCTCGCTTCTTTAAACTGTGGGCATTTATTTGGAAGAAGCTGTATTGAGAGGTGGTTAAAAAGCAGAGGAAATGAGAAATGTCCACAATGTAATGCACCTGCCAGGAGAAAAGATATCAGAAACATTTATGCTAAAGCAATTAAAACTATAGATACTACAGAACGAGACAGGGCCCTGTCAGATTTGGAAAAGGAGCGGCAGGCTCGGAAAAAAGCAGAAGAGGCAGAAGCAAGGGCATTGTTACAGTATCAGCTTGTTAAGGCAGAATGTGAACGAATCAAAGCACAGTTTCTGTTACAGCAGGAGATGTCACTGAAGAACCAATCAAGCCAGGGTAGCACAATATCATCAACTGCTTCATCTTGTATGCAGACTGTGCATGGGGAGAACAGTAGTAATGCACCAAAAAGGTCCTACGTCCTTCAGAGATCATTTCAGGTTGCGCAGAGTGGAGCAAGAGTTTTGGCCTTTGACAGTCACCATGTAACATTGGTTGTGTCCAAACCTTCACCAAATCAACTTTTCCCAGGTTTTGGCATTGTTAAGGTCAGCTCTCTTGACTCAAAACATTGTGAGTTTGTATCTATTCACCAAAAGCCTGTGCGAGATGTCGCATTCAATCGTCGAGGTGACGGCTTATTATTAACTGCAGGGATGGACAAGACTATCAGAATAACAAGTCTCTTGAGCAACACAGTAGTACAAACGTATAAAGTTCCTGTACCAGCATGGTCCTGTGCTTGGAACAATACTGACACCAATTATGTGTACTGTGGTCTGCAGAATGGCGCTTGTTTGATTTTTGATACTAGAAACACTGATACCTACCTCAAAAGCTTACAGTCTGAGAGGCCATGTCCTATTGTATCACTGGCTTGTGTTGAGCCTAATGTGAATTCGGAATTCAGACCTGGTGGTGTGTTGGTTTGCAAGTTAGAAGGAGCATGCTTCTGGGAGAACACTTTTGCGGCAGACTATCTTTGTCATCAACTCACATTACCAGAAGGTTCTTTTACAAGTCAATCATTTGAGCCAAACACAAGGCACTGCATGTTTTCCTTGAGACCATCCAAGAGTTTCCCCAAATCAAGACATGTGGTTTGCCAATTACAAGGCAAGGGTATTGGTTCGTCGACAGTGAGAGCACAAGCAGGGAGTTCTGAGAACGGTTTGACTGACAGTCTGCAACAACCTGAAACCACAGCTGTCTGtgtgtgtgtAACGCTGTCACCCAGTGCACAGGCGGACCATGCCAGAAACTTCTTAGTCCGATCTGTCTTATTCCCTTCTCCCGACGAATCAAACAAGCTGCTAGCCAGTGCTGGTGATGAGAGTTCAAATTCAACACTGGTGTGGGACGCGAGTAGTGGTCAACAGCTCCAAAAACTTCCTAACCAGGGTAGTGCTGTATTAGATGTCATTCCATTTTCTGTAAATGGAGAAAATTTTCTGACAACAGTCAATGATCAGAAGTTGGCCATTTACAGGAGAGATTGA

Transcript

c0035.g008.t1

Protein

Uniprot

Gene family

Uniprot term	Description
A0A974CYQ5	E3 ubiquitin-protein ligase rfwd3.S OS=Xenopus laevis OX=8355 GN=rfwd3.S PE=1 SV=1
A0A1L8GLK3	E3 ubiquitin-protein ligase rfwd3.L OS=Xenopus laevis OX=8355 GN=rfwd3.L PE=1 SV=1
Q8CIK8	E3 ubiquitin-protein ligase RFWD3 OS=Mus musculus OX=10090 GN=Rfwd3 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR037381	Family	E3 ubiquitin-protein ligase RFWD3	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16047	RFWD3 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0036297	Biological Process	interstrand cross-link repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15691	RFWD3; E3 ubiquitin-protein ligase RFWD3	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala