Gene detail

Detailed information of c0042.g019.t1 in Palythoa umbrosa

Genomic Location: c0042:189780...202262
NR annotation: XP_020613744.1, putative RNA-binding protein EEED8.10 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0042.g019.t1

ATGAACTTGGATAAGCTAAAATCTCTTCATTTTCGACTATTTAACGAAGGATTGGCGCTATGTTCTGATCCGGCTGTAAATGATGACGCAGGTAAACTTAAAACAAATAGCGAAGACCACACTGCCACTTCGAGTGCTGCAAATCTCATCGATGAAGGCCGCCAAAATTCTCCCAGTCTTGTGACGGAGGCTTCTAGGTTTTGCAAGAACTCTCGTCAACAGAATTCACGCTGTAAGGTGTTCGTTGGAAATGTTAGTTACAAAGTAAAACCTAATGAGTTAAAATCGTTTTTTGAGTATTTCGGCAAAGTCATTTATGCACAGATTGTCCGTGACAGGATCAAGAAGAGATCACGTGGGTTTGGTCATGTGGTTTTTACTAATGAACAGGATGCACAGAAAGCTATCAATTCTTCTGATGAGGAGAGACTCTTAGATGGGAGAGTGATGCTTGTTAAGGTGTTGGAGAGAACAAAgaaaaaagGTAAATTTAAAGATGCTGATCATAAACATGAAGAAACAGAGACTCTTGAGGAAGTTGTGCAGCAATTCACTGAAAGATTAAAAAGTGAAACGGAAAGTGCAGTTATATGCAATGGAGTTATGTCACAAGATGAAACAAACCTTGATCATAGTATCAACCTTCTGAATGATGACTCCATTTTGTATATTTTCAAGCAACTTGGGCTCAAAGATCGAATCAGGATTGAGAGAGTGTGcaagaggtggcaAAAGCTGGCAATCAAATCCTGGCAGTTCGTTCATCATCTTGACTTTAAGGGCATTTTTAAATCCTTTACAGAGTATGGAGGCCTTACAGATGACATACTCTGGTCCATTCTTAAAAGAGGCCAATATTTAAAATCTCTGGATCTATCTGCTTCGCCATCACTGCTAACCGAGTTTTCAGTTCACTTAATAGGGAAATACTGTAAAGGATTACAAAAATTAGATCTGTCAAAAATGACAGTCACCACaagttctttacgagcTCTTTCCAAGCACTGCTCTAAACTTAAGATAATAAAACTAAAAGGATGTCACAAAGTCGGAGAAAAAGGTCTCTGGTGGCTTTTTAAGCAGTGCCAAGAACTTAAAGAAATAGATGTTGGTGGGAACAACCGACTATCGGGACAGTGTTTTTTCATGTTGTCTGAAACCTGTGAAACCCTGGATATACGTGAGTGTGCCAAGGTGCGAGATGCGGGATTGTTGCATATTGGTAATAAATGCCCCAATCTGAAGTCCATCAACATTTCTGAGTGTACATTTATCACAGATGAGGGCCTTGTTTCTCTCACACAGGACTGTAGACATCTCGAGAGGTTGCAATTATCAAGAATGTCAAATGAAGTTTCAAGCAGAGGACTAAAAGCAATTGCAAATTTGTCTTATTTGCGAGTGCTGGATTTATCACGTAATGCTGCTGTTAATGATGAAGTGTTATTTGCTATTGGAAGTTCTTGTATTCACCTGAGCGTGTTGGACCTATCGCGGTGCCGTGGAGAAATCACTGATGCCGGTTTACAGTGTCTGGCTTCGTGTTACCAGCTGACAGATCTGTGTATAAACCAACTGGAGAAGATCACCAATGAGAGTATAAAACATCTTGCTTTCAACGGCACAATGCAGAAGTTCGTTGCCCGCCTGTGTACCTCAATCTGTGACCAAGCTGTGATTGACCTGATTCGGGAATGTCCTGATCTGCGTGAGCTGGATGTGTCTGGGTGTGACGGCGTAACTGATCTGTCACTAGAATATCTCCATCAATATCCCACCACGGAGGTGCACTGTCCAATGGAACTGGACATTGGAGGAACATCAGTTACTCTCGAGGCAGCGGAGGCGATGCGCACTGCGACAACCTGGTGCCGAGTGGTGACAGAAGATTTTTCCATGAAGTCCGTGTGGGGTGAACGGGAGCCGAGGATAGAATTTGGAATCTTGCTGCCGGATTGGGACGAGAgcgaagacgaagACGATGTTGAGGGTTCAGCTAATTTGTTTGGCAGGGACGAGCGTGCTGAGGATTTTCTTCAGGCCTGGGACCCATCGATGTACTCTGATGAAGAGTGGGATCTGTGA

Transcript

c0042.g019.t1

Protein

Uniprot

Uniprot term	Description
Q9FGS0	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00646	F-box	F-box domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala