Gene detail

Detailed information of c0044.g032.t1 in Palythoa umbrosa

Genomic Location: c0044:228070...243586
NR annotation: XP_027044748.1, DNA mismatch repair protein Msh3-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0044.g032.t1

ATGAAGACTCTGAACGAATCGCAGGATATAGCAGAACAAGACAGAGCGGCAGATGGAGGAAATAACTACTTGATGTGTGTCTATCAGGCTGCAGAACGGTTAGATGATCGAAACCAAACTGGAAGAGAAAAAATGGCATTTGCAATAGTGGCAGTCCAGCTTGCAACGGGAGACGTTATTTATGATGAGTTTGAAGATGGAATAACCTTCAGTTGCTTGGAAACGAGGCTTGAGCATATAAACCCAGCAGAACTGTTACTGCCTGCTACACTGCCTCTTCAAACTGACAGCTTTATCAAGGAATTTGTAAGTCGGAACTTAAGGGACGAAGATAAAATCCGTTTGGAGAGGATAGAGGACAAGAGATTTGACCTAGACAGTGCTGAAAGCTCAATCAAAGagttctataaaaaagagctatcaaaaGACACAACGATATGCACCGTTTCTTTACCTTGCAGTCTACAAACTCGTGTAAATGAGGGAATTTGTAAATTACAGGAAGGCTCATCACTCCATATTGCTATTAACCTGCCGAAATCTGTTCAGGTTTGCTTAGCTGCTCTTATTTTTTATCTAAAGGACTTCAAACTTGAGAGGGCTCTTCAAATAGCAAGCAACTTCTCAAAGTTTACAGTAGAGTCAAAGCACATGAAACTGAATGGATGTACATTGAGGAATCTTGAGGTGTTTAAAAACGAGACGGATGGAAGAGAAAAAGGTTCATTGTTCTGGATATTAAACCACACTAGCACAGCATTTGGAAGGCGCTTGCTCAAGAAATGGATTTCTCAACCTCTTCGGGATGTGAGAGAAATCGAATCAAGATTGGAAGCAGTTACTGAGCTTATTCGATCAGATTCATCATGTGCGATAAAACTGAGATCCATTCTATCCCAAATACCAGACGTAGAAAGAGGTCTCTGCAGTATTTTTCATAAAAAGTGTTCGCCGTCAGAGTTTGTGGGAATAGTGAAAGCGTTGTCAAATGTTGCAAGACATCTCAAGGCAACCAAGGACATGGCACTGCAGGAGACTTCTTCACCTCTGCTTTTTTCCATCTTCAGTCAGGTTCCAGATTGTTTAGATAACGTTGACTGGTTCCTTAGTATCATCAGTGAAAAGGCAGCAAAAGATGGAGACAAAACTAAACTGTTTTTGGAGCAAGATCAGTTTCCCGACATCAAAAAGTGTAATCAAGATATCGAACGAATCTCAGATGAACTTAAGAAACAtcgctcgcatatcagacaaactTTGCACAACCCATCTATTGACTACTGTTGTGTGTCAGGGAATGAGTTTCTAATAGAGATCCGTAAAGCCAATCTCCATTTAGTACCTGCCAACTGGGTGCAAATAAGCTCTACCAAACAGGTTTCTAGATACCGAACACCGTTTGTGGAAGAACAGTACAAGTTGTTGTGCCAACACAGAGAGAAACTGTCTCTTGCTTGCACGGAGGCTTGGCTTGACTTCCTAACACTGTTTTCAGAGCATTACAACCAATATCGACGAGGTATTCAACTTCTGGCAGTTGCCGATTGTTTGTATTCCCTCTCGACTGTAGCAAAACAGGCTGGATATGTGAGGCCATTGGTACAAGAAGATAAGTCCAATTTCAcaatttcacaaGGGCGACATCCTATAATTGATGTTTTGCTGGGGGAGCAAGAACAGTTTGTTCCCAATGACACAAACCTTGATGCAAATGGAAACCGCTGTATGATCATAACAGGTCCAAACATGGGCGGGAAAAGTTCCTACATTAAGCAGGTAGCACTGATAGCAATCATGGCACAAATCGGGTCATACGTTCCCGCCGAACAGGCCAACCTCTGTGTCCTTGACGCCATTTATACAAGGATGGGAGCGTCTGACAACATTTACCAGGGAAGAAGTACTTTCATGGTAGAGTTGCAAGAAGCATCGGAAATTATGAAACAGGCGAGCCCACGATCCCTTGTTATTCTGGACGAGCTTGGTCGCGGTACTAGCACACACGACGGAATGGCCATTGCCTACGCGACTTTGCAACATTTCATTACTCAAATTAGATGCCTTACTTTATTTGTAACGCACTACCCCACCCTTGCTGAACTTGAAAGAACATTCCCCGCTGCTGTCGCAACCAATCACATGGCATTTATGACGTCAGAAAGCAAGAACAAGGaagatgaagaagtaGTTACGTTCTTATATCAACTGGTTCAGGGTGTCGCAGCGAGAAGTTACGGGTTAAACGTTGCACGTCTAGCAGGAATACCAAACGGTATATTGAGTGTAGCTGCTACCAAGTCACGTGAGCTGGAAGCTCTGATAATAGCACGTAGGTGA

Transcript

c0044.g032.t1

Protein

Uniprot

Uniprot term	Description
P20585	DNA mismatch repair protein Msh3 OS=Homo sapiens OX=9606 GN=MSH3 PE=1 SV=4
P13705	DNA mismatch repair protein Msh3 OS=Mus musculus OX=10090 GN=Msh3 PE=2 SV=3
Q1DQ73	DNA mismatch repair protein MSH3 OS=Coccidioides immitis (strain RS) OX=246410 GN=MSH3 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00488	MutS_V	MutS domain V	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF05192	MutS_III	MutS domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan
IPR017261	Family	DNA mismatch repair protein MutS/MSH	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006312	Biological Process	mitotic recombination	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08736	MSH3; DNA mismatch repair protein MSH3	-	DNA repair and recombination proteins	ko03400	deepkoala