Gene detail

Detailed information of c0047.g007.t1 in Palythoa umbrosa

Genomic Location: c0047:91083...94539
NR annotation: XP_020896672.1, protein lin-28 [Exaiptasia diaphana]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
O65639	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1
Q9VRN5	Protein lin-28 homolog OS=Drosophila melanogaster OX=7227 GN=lin-28 PE=2 SV=2
P0A9Y1	Cold shock protein CspA OS=Escherichia coli O157:H7 OX=83334 GN=cspA PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR051373	Family	Lin-28 homolog RNA-binding protein	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46109	PROTEIN LIN-28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031054	Biological Process	pre-miRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18754	LIN28; protein lin-28	-	Messenger RNA biogenesis	ko03019	deepkoala