Gene detail

Detailed information of c0050.g006.t1 in Palythoa umbrosa

Genomic Location: c0050:97224...100634
NR annotation: XP_032239471.2, retinal homeobox protein Rx1 isoform X2 [Nematostella vectensis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
O42567	Retinal homeobox protein Rx-B OS=Xenopus laevis OX=8355 GN=rax-b PE=2 SV=2
O42201	Retinal homeobox protein Rx-A OS=Xenopus laevis OX=8355 GN=rax-a PE=2 SV=2
Q9PVY0	Retinal homeobox protein Rx1 OS=Gallus gallus OX=9031 GN=RX1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03826	OAR	OAR motif	Motif	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003654	Domain	OAR domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09332	RAX, RX; retina and anterior neural fold homeobox protein	-	Transcription factors	ko03000	deepkoala