Gene detail

Detailed information of c0050.g035.t1 in Palythoa umbrosa

Genomic Location: c0050:513184...523530
NR annotation: KAJ7385419.1, oxidoreductase, acting on NAD(P)H [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0050.g035.t1

ATGCCGTCTAAGAAAACAAAACAACAAGTTGAAACTCCTTCCGAAGAGAGTGGCAATGAGGGAGATGACGGATTTGTTGTTGATCCAGATCAGATTTTTGACTTACTCCCACAACCTTTTCGCCTTGTTGACAAACTTTTAACCCATATTTTTGACCAGACTTGGGAGATAATTGAAGATATTGAGCATGGAAGATATGAAAGACGATCAAAAGCTAACTTACCTGTTTATGATTGTGGAAGACAGCTGTTAACAGCCAAGGAAATCTCGTGTGTGTTGAACATTAGAGATACAAATATATTGTTTGTTTCACATAAAATGGGTCTAATTGCAGTCGACACCGTTCTCGGGCAAGTTGTGGCAACACATGAAGAGGAACAGGAAAAAACGGTGCTGATTTCAGCTTGCAGTTTGCAAAATGGTTTTTGTTTCGTTTGCACTTTGGACAACAAAGGTGTGGCCAGGATTTACTGCTATAGTGGAGATCAGATACAGCTGGTTAAATTACTTAATGAACAGGATAATCTAGTTGCAACTGTAGTGGAAATCTCTACTGATGGAAGCTATCTTGGAGTTGGATGGAAAGTTCCAAACAAAGACTCCTGGCTTGAGTTGTACAAAATTCCAAAAGAATCTTGGATAAAGGAAATGGAAGCTTTACTGAACCAAGTGAGGCCAAGAAAATCAACAGTTACTACAGCTACAGAACAACCACAAGAATCTCTCATTAGCTTAGAGTCAAGTTCCTTTGAGCGTCACGATGTAACATCAGTCCACTCATCATCTCCTCCACACTCTCGGCCATCATCTGCCCAGGGAggatcagtaacagtcactgtcaGTTTCACCAAACCCACAACTCTCTTAAAAGTGAAGCCCCTTCCAGGACCAAGTGCATGTCATGccaccactactgctgCAGCTCTCAAGGCCATTGATGGGGAGTGCAGTGTGATTGGTACTGGTGTCAATCATATTTTGTTGTCACAGTACTTTCAACACAGCAATAATACATTTACTGTGCTGCATGAAAACCAGCTTTCTTACCTCAAGGAAGATGAGCAAACAGATACATGTGCACCACAATTCCACTTTTTGGTTCCTAGCAGACTCATTTCTGGTGGACTTGATTCAACACCTGGAAAACCTAACTCCATTGCAGTGAGGTGGACAGATGGAACACAGCTGTTTATTTATTCATTACTGAAGTCTAGCAAAGACTTGGATCAAAAACCAGATGTTGTGTGGCCATGCACTGATAATATAGTTGTTAGTGCCACAAGCGACTGTGCCTCATTGCTTGCCTTTGGTACCAGTAGTGGTACAGTGGTAGTGTGGGACGTATATCGAGGTATGTTACTGAAAGTTTTGTCAGTGACGGAGAAGGGTAGAGTAGAGCTGCTCCACTTTCTTCCTTGTGGAGTGGTAACGGATGTTAGTGAAGAAAACTCCAGACAGCAAGAGACATTCCCTCTCGTGAACCTTGTTGTCAGTTGTTATGACGGAACGTTTGGAGTTATTCAGTGTGGCGGAACACACAGCTCGTCACTTGTACCTTTACTGGATAAGTCTTCAAAAGAAACAGAAGTCGTAACAAGCACACTGACTTTAGACAAAATCCCTCAAGTGATTGTAGCTGGAAAAGATACTGGTCATGTGACCTTTTATGACGTCAAAACCTGCAGTGCAATTTGTCACGTCAGCCTGCCGGGGGGGTGCTGTCTAACCACAAGTATCAAGCCCCAACTTTCTGCAGAGGGAAAAGTGTTAGTTGTCAAAGGACAATTTCCCGACCAAGATAATGACATAATGGTAGAAACAGATTGTGTGTACTTGTTTCCCCTCCTGTCATTGCCGACGCTTGATCAGTACTGGAGGGGTGCTGTAGCTGTACAGTCAAATATATCTGATAACACCATCGAGACAAGGCTTCAATCCATGATACTTGACAGACTGGCCAGTCAGGGCTCCAGGCAACTGAGAATGGAAGATCGTTGGTCGAGATTTCAAACTGAATTGAAGAAAATGCAAGCCGCAAAAGGCAGGAAAGGCAACACATTTTGGTTCCATTCAAACCCTGTAAGTTAA

Transcript

c0050.g035.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q6P2C0	WD repeat-containing protein 93 OS=Homo sapiens OX=9606 GN=WDR93 PE=1 SV=1
Q402B2	WD repeat-containing protein 93 OS=Mus musculus OX=10090 GN=Wdr93 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21030	WDR93	WD repeat-containing protein 93	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006885	Family	NADH dehydrogenase ubiquinone Fe-S protein 4 mitochondrial-like	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR049547	Repeat	WD repeat-containing protein 93 beta propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12219	NADH-UBIQUINONE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005747	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0022900	Biological Process	electron transport chain	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24762	WDR93; WD repeat-containing protein 93	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala