Gene detail

Detailed information of c0078.g027.t1 in Palythoa umbrosa

Genomic Location: c0078:363383...395790
NR annotation: XP_031570919.1, probable ATP-dependent RNA helicase DDX46 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0078.g027.t1

ATGGGAAGTGACAGCAAAAGGGACAAGCGAAGAAGGGATGAAGATGTCTCTGACAAAGAGAGAGAATCTAAGAAGACAAAGGAGGATGAAAAAGAACCAAAAGATTCAAGTTTAGAAGAGAAAAAAATGTATGAGGAAGACAAGGATGCAGAACAGAAGCGGCTTGAAGAGGAAATGCAAAAAAGACGGGAAAGAGTGGAAGCATGGAGAGTGAAGAAGAAAGCTGAACAGCAGGCACTTAAGGCAGAGAAAGAAGAAGCAGGAAATAAAaagacaaagaaaAATTGGAGTTTGgaggatgatgatgaggatgatgaagaagatgacgatgatgaggaagCAATGGACGAAGGCTCAACAGAAGATGAAAAGAGGGGAAACAGGGATGAGACGAATGCTTCAAAGAGAGTCAGCAATGGAAAGACTAAAGAGGACGATGAAGACATAGATCCACTGGATGCTTTTATGGAAGAAGTTCACTCAGAGGTGAAAAAAGTTCAGCTTGGTGACAAGAAGAAGACATCCAAAGGAAATGTTACAACTGTTATTAAGACAGTAGTTACCAAAAAAACAGGCGCAAAACCTCTTGAAAACAAGGGTGAATTGATGGAAAATGATCGAGATGCAATGGAGTACTCTTCAGAAGAAGAACCTGAAgaagaCGATTTTGAAGGAACATACTCTGGCTTTAGAACAAAGAAGAAAAAGGATCTGCAAGCAGTGGATCACAGCAAGGTTTACTACTCCTCTTTCAGGAAAGATTTCTATGTCGAAGTTCCTGAGCTAGCAAAAATGACAGATGAAGAGGTGACAGTCTTAAGAGAGCAGTTAGAAAATATTCAGGTGCGTGGAAAAGGCTGCCCGAAACCGGTAAAGAAGTGGGCACAATCTGGTGTGAACCTCAAGATATTGGATGTGCTGAAAAAAAATAATTACGAGAAACCAACACCAATCCAGGCACAAGCGATTCCAGTTGTCATGTCAGGAAGGGACATGATCGGTATAGCAAAAACTGGAAGTGGTAAAACACTTGCCTTTCTTCTTCCGATGTTCAGACACGTTCAGGACCAGCCACCTTTGGACAGAGATGATGGACCTATTGCTATAATCATGACTCCCACTCGAGAGCTGGCTATACAGATTCACAGGGAGTGTAAAAAGTTTTGCAAGCCACTTGGTCTTCGAGTTGTTTGTGTTTATGGTGGTACTGGAATCAGCGAGCAGATTGCAGAGTTAAAACGTGGAGCAGAGATTATTGTGTGCACTCCTGGAAGAATGATTGACATGCTGACGGCGAACAATGGACGTGTCACAAACTGTAGGAGGTGTACATATTTGGTGTTAGATGAAGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAGGTTATGCGTATTATCGATTGTATACGGCCTGGCAGAcagacagTCATGTTTTCAGCCACTTTTCCTCGTCAGATGGAGGCACTTGCTAGGAAAATACTTAGCAAGCCAGTAGAGATACAAGTTGGCGGTCGCAGTGTTGTATGCTCTGATGTTGAGCAGCATGCTATTGTAATTGAGGAAGAAAATAAGTTCCTAAAACTTCTTGAGCTTCTCGGGATCTACCAAGAACAAGGGAGTGTGTTGGTGTTTGTGGAGAAACAGGAATCAGCCGACATTTTGTTCAAGGATTTGCTGCGGAGAAGCTATCCCTGTCTTTCATTACATGGAGGCATGGATCAGTTTGACAGAGACAGCACAATTGCAGACTTTAAGAACGGAGTTACCAAGTTAATGATCGCTACGTCAGTCGCCGCTCGAGGTCTGGATGTAAAAAACCTCAAACTTGTTATAAACTATGACTGTCCCAACCATTATGAAGATTACGTTCATAGGGTGGGCCGTACAGGAAGAGCAGGCAATAAAGGGACTTCCTATACTTTTGTAAGTGGAGAACAAGGAAGATATGCTGCGGATATTATTAAGGCCATGGAATTATCAGGAACCACTGCTCCAGAAGATGTTAAGCGACTTTCAAAGGAGTTTAAAGAAGGCTTGAAAGCGGAAGGAAAACACGTGGTAAAGAGCAGCGGGTTTGGTGGAAAAGGATACAAGTTTAATGAAGAGGAGGCTGCTAAAGCCAACGAAGTGAAGAAAATGCAGAAATGGGCTCTTGGTTTACAAGACTCGGATGATGAAGCAGAAGCCGAGGAAAAAGCAGTTGAAGAGATTGACAGGAAGATCGAGCAAGTGTTTAGCACCAAACCGCAGATCAAGAAACAGGCACCAGTTGGTGGCACGGCGTCTGGAGCAGAGATTAAGGGTGAACAACAAGCCAAGTTGAACCTCGCTACGAGTATTGCAGCCAAGATTAACCAGAAGATAAGCGCCGGTACAAACAATCTAGACCTGACTCAACAAGCTGCCAGTCAAATTATCAAGGGAGGAACAGTCAGTGCTCTCACGGGTCTGGGGCTGGCCAAGCAGCTGGCAGAGAAGGTTCACTCGAAGCTAAACTACGTGGCACCATCCGCTGAACCAGAGCAGACAGAACAGCAGGCGGCAGAGATGGAACGTTACGAGGATGAGATTGAAATCAATGACTTCCCACAATCCTGTAGATGGAAGGTTACCTCAAAGGAGGCTATTGCAACCATCACGGAGTATTCTGAGGCAGCCATCACAGTGCGTGGCAGCTACTTTCCCCCAGGCAAAGAGCCTAAAAAAGATGAAGGCGAAAGaaaaatatatttatatatTGAAGGACCGACTGAACGCTCAGTGTCGATGGCCAAGATTGAGATCAAGCGGTTAGTCAAGGAAGAAATGATGAGAATAGGTACATACAGAGGCCCGCAGCCAACGGGGAGGTATAAAGTTCTGTAA

Transcript

c0078.g027.t1

Protein

Uniprot

Uniprot term	Description
Q569Z5	Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Q62780	Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Q7L014	Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12811	DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5	EC:5.6.2.7	Spliceosome	ko03041	deepkoala