Gene detail

Detailed information of c0090.g002.t1 in Palythoa umbrosa

Genomic Location: c0090:13931...21315
NR annotation: KAJ7376321.1, arachidonate 5-lipoxygenase [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0090.g002.t1

ATGACGTCATACAAAAGTGCTTATTCCGTGACCACGATCACAGGCAACCAGGAGGGGGCTGGCACTAATGGAACAGTGAAAGTCACTGTCACTGGGACCAATGGACGCACCGGTCCACACGTATTACAAGGGTTCTTGAAAAACCATTTTCACAGAGGAAGAAAAGATGAATTTTCTTTTCGAGCTCCGGATGTTGGTAAGATTCTTCTGGTTCAGTTAAATGTTGAGAAAAGTCTTTTCAGTGGCACAGTGGAGTGGTTTGCCGAGAAGGTTTTGGTCAAGAGTAGTGGAGACACCGAGGAACATTTGTACTACGGAGGTTGGGTCACTGATCAAGTTGTTCTCTACCACAGCAAAGCCCTATTGCCAACTGCTCAACAACATCATTTGACTCTGGATCAACGCAGATTGGAGATAATTTCTCGCCAACAGCAATACGTCTGGGCCACAGAGGACACGTATCAGAGAGCAGGGTTCATTAAAGCAGCTACTCCTGAAGATATCCCAAAAAATGCTCAATTCACCGACGATGCAGACCGCGCCTTTGTTGATGGTTCGATAATCGGGGCATCTAATTTGGCCTTAGGTGTTCTAAAAACGACTTTCACGGAAGGTTTTAGCAATAGTTTCGACGAACTGGATGACTACAAAGATATCTTTGTAACGGTAAAAGATCTCTCTTGGGTTGCTGAAGATGGAAAATGGCAGGATGATCGCGTGTTTGGATACCAGTTTCTGAACGGTTGTAACCCGTGTATGTTGGAGCGCTGTGAAAAGTTACCAGACAACTTTCCTGTAACTGAGGACCTGGTCCGCGAGTCACTGGATCGCGGACTTACGTTAAATCAAGAAATGAAGGAAGGACACATTTACATTGTGGACTATAAAGAACTGGAAGGTCTTAAGAGGATGTCCGGTCGATTTTTGCCAGAGTGTCTTGGGTTACTCTACGTCAACAGTAAGGAGGACCTGGTGCCAATTGCTATACAGATGTACCAgacaccaggtgattctaaCCCTATCTGGACACCCAGTGATTCTAAGTACGAGTGGATGTTGGCCAAGATGTTTCTGAGAGCTGCGGACAGCAATGTGCATCAGATAAAAAATCACCTGTTTATGACACATCTGGTAATGGAGGCATTCGCTGTGGCAACCTTCAGGCAACTTCCCTCAATCCATCCACTATACAAGCTTCTGTATCCCCACATACGGGGAACTATTCCGATCAATGTTCGAGCCAGGACGAGTTTGATAAACCCCGGGGGAATAATGGACAAAGGTCTTGGATTGGGTGGGGGAGGACACATAGAGTTAATGCAAAGAAGCTACAAAAACTTCACTTGGGACATGTTAAATGTTCCTCAAATGCTGAAGAAGCGTGGTGTCGATGATGCAGAGAAACTTCCCAAATATTACTTCAGGGATGATGTGAAAACACTATGGACGGCTATTGAGGACTTCCTCAACGAGTTCGTTTCAGTGACATATACCTCGGACGACGAGGTTAAGAACGATAACGAGCTATCGGCCTGGGTTCAAGACTTGCATGACAATGGTTTTCCCGTCCGGGAGGGTGACGTAGACCACCAATTCCCAAAAAGTCTAACATCGCGTGACCAGCTCGTGGCTTTGCTGACCTGTATCATATTTAACGGGTCTTGCCAGCATGCAGGTGTGAACTTTGGACAGCTGGACATATACGGGTTTATTCCGAACGCGCCGTCCATCATGCGTCAACCTCCACCTTCTGATAAAGGTGTTGTTGATCTGAAGTACGTTATGGACACACTGCCGAGTCGAGTGCAAGCTGGGTGGATGGTCGCCATAGCTTTTGCCCTGACACAGTTTGCAGAAAACGAGCGTTACCTTGGCAACTACGAGGACAGTCATTTTAATGAGACGAAATACAAAGAAGTCATCGCCAAACACGCCGAAAGAGTGGAAAAGATAAAGGAGAATATTGACAAGCGAAACAAATCATTGGTTGTACCCTACGTGTACCTCCGCCCGGATCGCGTGCCGATGAGTGTTGCCATATAA

Transcript

c0090.g002.t1

Protein

Uniprot

Uniprot term	Description
O16025	Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla OX=47982 PE=1 SV=1
P48999	Polyunsaturated fatty acid 5-lipoxygenase OS=Mus musculus OX=10090 GN=Alox5 PE=1 SV=3
P12527	Polyunsaturated fatty acid 5-lipoxygenase OS=Rattus norvegicus OX=10116 GN=Alox5 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00305	Lipoxygenase	Lipoxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000907	Family	Lipoxygenase	Interproscan
IPR001885	Family	Lipoxygenase, mammalian	Interproscan
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR013819	Domain	Lipoxygenase, C-terminal	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR020834	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR036226	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771	LIPOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0034440	Biological Process	lipid oxidation	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan