Gene detail

Detailed information of c0096.g035.t1 in Palythoa umbrosa

Genomic Location: c0096:367373...373657
NR annotation: XP_020616445.1, uncharacterized protein LOC110054399 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0096.g035.t1

ATGGTAGATATCTGCAGTAAACAGACAGAGAACTTCGCACGTCTTGTTCATCTCTTTGttgttgttggagaagaagTGTTAAGAGAGAAATTTGACAGTATTCACAACTGTTCAGATCTCCCGTCTGTACTAGCTACACAGGAAGAATATTTACGAAATCCCACAACGCTTCTCTCGCATTCCCAGCTGGCGAAACTTTATCCCTCAGCTGGTGTCTATGGTACATCCAAAGAGTGGGACATTACGTTGATATGCAAGATTTTCAGGGAAATATGTGGTCTCACAGCTCCTACTACTGGCTGGTTTAAGTTGCCAAATGCTCCCGATACAAGTTTACAAGCTGATCTGGCTCGCGTCAACTACTATAGGAACGTGTTTTATCGTTGTGTGACTAAACTGGAGCTCGATGATATCAGCTTTACCAAGCTCTGGGATGAGATTAGTTTGGCGTTGATAAAAATTGCATCAGGTATTAGCGCCGCTAGTGGAGCTAAATGGAAGAAGTCTATTGAAGGACAACTAAAGTCTCCTATTAACGTATCAGATGAAAAGAATCTTAGCCAACTTGATACGTGGTACAGATATGACCTCAAAGAGTATAGGACATTTCATCTGCATAAGGAGTCTCAAAACACTAAACTCACTACAAGGGATAACTACTCATGTTTGCTGAATCTCCTTTTTGATGTTGGTAACAAAGCTCTTCGTAAATTCTTCAAGTCACGATGGCCAGTGGTACTATACAATGCAACAGGACGTACTGGTACTGCCTGGTCAGACTTACCATCGGATGGATACCAGTTCTTGAGTGAGGACACCACTCTGAGGCTTGAATCCCATGAGTTACCCAAAGTACAAAACGGTGATACAAATGAGTGGGATCTCACCATCCTCTGCAAATTGTTAATCCATTCTTCTCTCCGGTTCGTTCTACGTGGAAGTCCCGAGTATCGTGAGCTGATTCAACTGCGAAAGTTGCGCAACTCGCTAGTTAGTCACGCAAAAAAGCCTGAGTTGACAGACATTGAGTTTAACCAAGCTTGGGAAGATGCATCTAACGCACTTATGCAATTTGGTGTCCAACACGAAGAAATTGCAAACATAATTACAGTTAATCAAAAAATGGATGATTTTTTGCTGAAGCAAACACAGATGGAAGAAAAAGGAAAAGAAGAAAAGGCTCACTCTCAAGTCGCCCCAGTCTCTCTCCCCGATGTTCCTCCTCACTTCACAGGTCGAGTGAAGTATCTCAGTGACGTCATTGAACACGTGTCCAGTTCATCCACACGACTACTTACCATCTGGGGGTTAGGCGGGTTTGGTAAAACAGCCCTTGCTGTTAGTGCAGGCCACAGGTTTCACCAGAAAGGAATCAAAACCTGGTTTGTTTCACTTCGCGAGGTGACTTCCATCGAAGGGATAATAGAAGTTCTTCTAGGCGTCGTCGTCCCGACTTATTTAACGGAAAAAGGGCATCATGGACTATTGACACAACTGTGTGCACATTTCCGCAGCATCACAAATACTAGTGTATTGATTATCGATAATGTTGACGATTTGCTGGCTTCGCAAGAGACAAAAAGCAAGCTGCTCGGTATTCTAGAAAAGCTTTTACAACAAAATAGAAACTTAAGCATTATTAGCACTTCTCGAGAGGCAATGAAATTTGCCAAACATAACCTCAAGTCGGTTGATTTGTTTATCGGAAAACTGCAGACAGATGAATCAATGGAACTGCTGCAAAACCTTGTGGAAACTCAAGATCTGACTTTTGCAAAGAAGGAATGTGTTGAGTTGATAACTTGTTGTGACAACGCTCCACTTGCTTTGAAACTCTTAGCCGCTGTTATTGATCAGGACCGGATAACGCCAACAGAAATACTTTGCGATCTAAAAAGATCGAATATTTTGAAAGTTGTTGATAGCGAAGACAACCCTGACGATCAAAGAATGTGCAAGGTTTTCGAGGCATCGttttccAGGCTGTCTAAAGAATACCAAAGGATATTTATTTGTTTATCAATCTTTCCAAGTTCCTTTGACGCTGACGCCGCAGCTGCTGTCCTTGGCGAAGAACATGTTCTTGAAGTCAAGAAGAAGCTGGGATTACTTGAAAGAAAGGCATTCGTAGAATACGACGGGAGTAAGGGGCGCTATTCTATGCATACTCTTTTACAAGCTTTCGCTGAGCTTCTTTGCGAAAACAATCATGAAATTTGCGCTTATAGAGATCAATCACACGTCCATTGTCAGAACTACTTCTTCAAATTGTTGGAAGACCTGAACGGCAAGTTTTTGACCGGACAGTCGCTGAATGCCACGCAGAGTTTCTATAAAGAAAAAGAAAACCTAATTTTCTGTTTGCAAGAGGTTGGACGTGACATGTGTCAATCTAAGATAATTGAGGGATTAACACACATGGATATCTTTTTAGATACTGTCTTCTGGAATGATCCAAAGACCATGTGTGATGTGTATGAGCGATGTCTAAACAAATGCAAAGAGAAAAATATGCAGTTTCTTTATGCCAAAGTGTTGTTGTcaaaatgtTTTGGTATACTTCACTGGGAAGAAAACCTTGCAGATGAGCTACTTTCTGACGCTTTAAATGCAATCAACAAAGTTTCTGCTATCCCTCCTGATACGCAAGGGAAGTTGTTATGTTTTTTTGCGTTCCGAAAAATGGTATTGAACCATGTTGACGAGGCAGTTGGTTTGTTCGAGAAGGGCATTTCACTTCTAAGCTCCCATTTATCACAACTAGTTATAAAAGCAGTTGCTCTGCGTGTTTTAGCAGACTGCTATGAATTGAACCAACAAGCTGATAAAGCATCGAGTACCAAGCAAAAAGTTTTTATTTTAGGTCAAAAGCACCAAGGATTGATTGCAGTTACTCAAGAGCTACATCATCTTGACGTGGACAACTCAAACCATCCGTTCCTCAGTGCAGTAACCTACTTCTTATCAAATTTCCTTAGAACACCAAGTACGAAGCAAGGTGTCCAGCATACCATTCTAAACACAGTTAAAGCAATCGAGGAACAGCGCAAAACCAGCGGAGACAGATTGGTTATTGCAACTCATTACGATATGCTTGCCAGTTCTCTCAATCAAATTGGCTGCAAGGAAGAAGTAGCGGTTCGCAGAGGAGCTTTAGACATCAGATTAAATGTACTGGGTAAAAATAACAAACATACTGCCTTGTCATACCATAACTTGGGTTTAACGCATTGCAAACGCGGTGAATATGGCGATGCTCTCCTTGCCCATAGACACGCGTTGGACATCAGGATAAAGTTACTTGGCGACAACAACGAGGACACCGCATCGTCCTACAATAACATTGGTATGGCGGTCTACTTGATGGGAGACTATAGCACTGCTATGGATGCTCACAAACGTGCACTAGAAATTAGAAGGAGGGTACTAGGTGAAAACAACGAGTACACTGCGTGGTCATACCATAATCTGGGCATGGCGTACTACACCCTGGGTAACTTTGCTGATGCGGTTGCGGCTCACAAACACGCACTAGAAATCAGAAGGAAGTTACTGGGTGAACTTCATGAGGACACTGCCTGGTCATACCATAACCTCGGCGAGACGCATTACATGCTGGATGACCTGAGCAGTGCATTGGATGCTGAAAAACACGCACTGGACATCAGAATTAAGATACTAGGTGAAGATGATGAGGACACTGCAAGATCGTACCACAACCTTGGTGAGATGCGCTATCTGCTCGGTGAATACAAGAGTGCTTTGGATGCTGAAAGGCACGCGCTGGAAATCAGGATCAAGTTGCTTGGTGAGAATAACGAGGAGACTGCCTGGTCTTACCATAACCTGGGGATGATACTGTACATACTTGGTGACTATAGCACAGCCATGGATTCCCACAAACATGCACTGGATATCAGGGTCAGGTTACTTGGAGAGGACAACGAGTACACTGTCTGGTCGTACCGTAACCTTGATACAACGCAGTCAAAGCTTGGTGGTTGTAGCATTCTTACGGATTATCACAAACAAAGTCAACTCAAATAA

Transcript

c0096.g035.t1

Protein

Uniprot

Uniprot term	Description
P25941	Regulatory protein AfsR OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=afsR PE=1 SV=2
A0A2J6RX17	Nucleotide-binding leucine-rich repeat (NLR)-like protein OS=Hyaloscypha variabilis (strain UAMH 11265 / GT02V1 / F) OX=1149755 GN=L207DRAFT_509616 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF00931	NB-ARC	NB-ARC domain	Domain	Interproscan
PF18738	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002182	Domain	NB-ARC	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR041249	Domain	DZIP3-like HEPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043531	Molecular Function	ADP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24313	SH3TC; SH3 domain and tetratricopeptide repeat-containing protein	-	Membrane trafficking	ko04131	deepkoala