Gene detail

Detailed information of c0119.g033.t1 in Palythoa umbrosa

Genomic Location: c0119:399921...420225
NR annotation: XP_027039857.1, probable ATP-dependent RNA helicase DHX58 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0119.g033.t1

ATGGGCCGCGACGAGATGAAAAGAATATTGACAGAAAGACTACAATATTTCATTGAAGAAGTTTTTCCATGCGACTTACTACCGTGGTTAACTTGCCTTACTGAAACGGATAAACAACAAATCCGATGTGACCAAGACAGACACGGTGATATAAAAGCCACGGATACGTTGGTCGACAGATTAAAGAGAAGGCAAGATGGCTTTTCACAGTTTGTAATCGCTCTTCGAGAAAATGGCAGCGAGCATGTGGCCATGTTACTTGATCCAGAAGAGAAAGTTGAAAATCCAGGAAAGCAACGCTTTGCCTATAAAGAAGCTTCGTTTGATCTGGTTTCTGGAACGGTTGTTGACATGCGCTTTACAGGCCAAATCAGTGATGACAGTGGGGAAGATTTACGTGAGGTCGAGGCTGTAATTGCAGATGAGTATGGGCAACCGAGTAGTGCCCAGGCCATAAGACTGAGGAGGAACTTGAGCGAGTTGCTTCCACCAGGTGCAGTCTTTTACAAGACAAAGAAAGGTTCCGTTGTGTGTGTCTTCAGAGTTTGCCGTGTGTCTGCTGCCCAGGAACTGTGGGAAATGTACCAGAATAAAACTTTGCACGAGAAAATACTACAACACATGCTTACTGACGAGCTGAAGGACAAAATGATAGAAGCTAAAATGATCGCGAAAAGCACAGGAGAAATCGGTGAACTTGCAAACAAAGAAACTCCACCAGCTCTTAAAATGCAACTATACATGATAGAAGAAAGGTTTAAGGAAGCTGTTAAAAATCTGAAAGGAGGTGATGCCAACGAAGCTGAGTCATTTTCCGCCCTTGTAATACCACCGGTTTATCTCGACAGCGATCAATCAGGAACTCACTCGCTAACTCTACGTGAGTATCAAAAAGAACTTGCTGCTCCCGCTTTGGAGGGACAGAACACCATCGTCTGTGCTCCAGCAAACAGTGGAAAGACGTATGTAGCCATTCACATTGCAAGACGTCACCTGGACAAATACACTAATGGTACTGATGAAGCAGATGGAAACTGCAGCGATAGAAAGCCAAAAGTGATCTTCATTGTCAGCACTCTTTCACTGGTGCTCCAACAAAAAGAACGATTTGAGTACTTCCTGAATGACAAGTACAGTGTAGCGGACATATCTGGGGGTAACTCGACTGAGGTTCCCCTAGAATTTCTTTTGTCAAACAACGACGTTGTCATACTTACTGCTCAGATCTTGGTAAATTCTCTGAAGACCAAAACATCTGGCGTGAAACTAACGGATATTAGCATGCTGATGTTTGATGAATGTCACCACACAAACAAAGACCACCCCTACAATAAGATCATGGAAAGGTACATGGTACTGAAGAAGCAACCGGGCATGAAACCAAAATCTCTACCACAGGTGATTGGTCTGACTGCTTCTCTCGGCGTTGGCAAGTCTAAAACGTTGGTAAAAGCAAAGGAACACATTCTAAAGCTGTGCAGTAATCTGGACGCGGAACTGATTTCAACTGTTAAGGAAAACGTCGAGGAGTTGCGACAAAACGTAAACCTTCCCGAGAGCAAGTTACACTCGGTTAGCAAGACCAAAGATTCCAGGTTTGAGATTGTGATCAGTAAAGTGATGGATGTGATCGAAAGGAAAGTAGGGACAGAGTGCGGTAAGCCTCCACAAGGAAGAGCCGGCCAGGACTATCGACAGTGGGTGGAGAGTTTGTATAGCTACGCAGTGGCTGAAGGAGAACGCTTTTTGGTAACGTTTGCTGAACAGTTAAGAGAGTACCACATCTCTCTGACTATTTATGATTCAACTCGTATGAAGGACGCAAGACGGCGACTTGAGGATTACTTTAAAGGGCTGGATGAAAGCAAGTTCACTGAAATTGACAGAAAACTGAAAGGACTATACACTCAAGCAGATGATGCACTTTCAAGGTACGTCAAAGAACACGGTGAGCCCCAGAACCCGATGCTTTTGAAGTTAAAGGAACTGGTTGTGTCTTACCACACACCTACTGAACAAACACTTTGCCAAGACAATGAGAACAGCAACAAATCGGATGCAGTGGTCAATGGCGAACACGAAACTTCGAGAGATGACGTTAAACAGAATGATTCAGTTGGAGATAACACTTCCGAGACAGCATCAACAAAGGACGGATGCGGtgctgctgttgTTGAACCTATTGATAAAGGCAAAGAGGCAGACACTCTTAATGAGGAGACTAAAGAAAAACCGCAACCGAGTGGTGCATGTAACAGCAACATGAAGTTGATTAGTCCCTGCAACGATAATGACAAAGAAGAAACAAAGAGCACTGGTGACGCTATTGAAAACAATTTGAAACAAGAGACAGCAACAATTCAATTCGAACCCGACACTGGCTGTAATTCCACAAATGGAGGAAGTCCTAAAATTGTTGATAAGGTCGCAGAAAACGCAGAGAACAAGAAAAGCCCGTCAGAGGATTCGGAAGAGGAAACGAAACCAAAGGGAATAATCTTCACACAAACCCGAGAATCTACCAAAGTTCTAGAAGAGTGGGTTACTGAAGATCAAGATTTAAAAAATCTTGGGCTAAAACCGTTGCGACTTCTTGGATCTGGCGATGGAAGAAACGGGATGACGCAACATGAAAGGGACTCGGTGATTGAAAAGTTCAAACGTGGTGATGTAAATTTGATCATCGCAACAACAGTTGCCGAGGAGGGACTGGATATAAAGGAGTGCAACTACGTCATTAGATATAACATGACTGGCAACGAGATCTCAAGCGTGCAGTCACGTGGTCGAGTCCGTACAGATATGGGAGAGTACAATGTGCTCGCGGGCGCAAAGTCTGGAGTTCTTGAGCGTGAGCATTTGAATCAGTTCAAAGAGATATTGATGACAGGTGCACTGGAGGCCATTCAGAGTCTTCTACCCGGCCAGTTTTTGGAGAAGATCGGCAACTTGCAAGAAAGGGCACTTCACAAGTTTCGGCTCCGAGAAGGAATCAAGTGTCTACAGACGAACTTTGATCCAGATGACATTAGCTTCCATTGTCGCAAGTGTAACGAGTTTGCGTGCCAAGCGCACGAGATAAAGCGAATTCAGGAAACTTATCACGTGATCCCCTCAAAAGATTTCCTTGAAAAGGCCACAATAAAAGAACACCCCAACCCCAAAACTATTGACGGAATCACCAAAAAAGACAAAATTCACTGTGCTACTTGCGGCGAGGACTGGGGCATCACAATTTTAACCGATGGAATTGAGCTGCCCTGCATAAAAGTTTCAAGCTTCGTACTTCGGACTGGAGGCGAGAACGGAAGAGGAAAGATGTACCGGAAGTGGTCCCTATGCCCTTTCAAGGTGAAAGAAGTTGAccttgCTGACATTGCTGTTAACAGGAGGCTTGGGAACGAAGAGGAAGATGGAGATTCATGGGAAATGGATTTTAACTGA

Transcript

c0119.g033.t1

Protein

Uniprot

Uniprot term	Description
Q9BYX4	Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Q8R5F7	Interferon-induced helicase C domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11648	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF16739	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR021673	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR038557	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR031964	Domain	Caspase recruitment domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12647	IFIH1, MDA5; interferon-induced helicase C domain-containing protein 1	EC:5.6.2.6	Pattern recognition receptors	ko04054	deepkoala