Gene detail

Detailed information of c0120.g021.t1 in Palythoa umbrosa

Genomic Location: c0120:335111...369503
NR annotation: XP_033112827.1, tubulin alpha-1 chain-like [Anneissia japonica]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0120.g021.t1

ATGGGCTCAACAAGACAGAGCCCAGTCGCGTTTAGCCTTCAGCTTGAGCAAGAAGAAAGCGCGTCGATCAGTAGATCGCCTCGAAGAAGCCGCCAGGGTTCCCTGCTCATGGACGCAGGAAATGGTGAATTTGAGACAAATTTTGCCGGATTGGAAGCGCTAGACCCACGCAAGAGAGAACTCTTGGAAACACGCTTCACGTCAAGTTCTGGCAGGGTTAACAATGAGAACAGCAATGCCAGTATATCATCTACTGGAAGTGACAAGGGGGAGCTGTTGATTGAGACTCCAGGTGGTAGAAGTGAAAAACTACCTGGTAGAAAACGAAAAGCTGGTTTAGATGGTTCTCCCAGCTACAGTCAAAGTAAAACTGGACGATCAGATTCTGGTATCAAAGCTATCACTGAATATTTCAAGCCGCCACAGTTTTCAGATGAAAACAGATCCACCCTTCCTCGTCCAGTTGCAACATTGTCCAACCATTCAGCTTTAAACATTGATGACAATTCAGATGGACTGGACTCATGTGCGATATATGTTCACGAAAGTACGCAGACTGATCTTACATTAAAAAGAATGGAGGAAATTGATCAAACTCTTTCTTGTGGAATAAAATCCTCTCAGCAAAAGGATGGTACAATTGATGATCTTCGAAGGGATGCCATGGAAAAATTAAGACAGAATCTAGACAAGTGTTTTACTGTTAATAGGGAGTTGCTGATAGCAGGGTCCACAGCAGAGAAGAAAGAAGTTAGGGAAAGGTGTATGAAAAATCGTCTGAGACTGGGACAGTTTGTGCCAGTAAGACAAGGCCATCAGTTTGTGGAAACGTGGGTGGAAGGGTTTGCTTTCAAAGAAATCACAAATTTGTCACCATCAGAGTATTATGAAAAAGATGAAATCTTGAAATTACGGGCCGCTGCTCTTAAAAAGGAAGAGACAGAGCTTCAGATTGAATCTGACAAACTTGATAAAGAAAGAAACTTACATATAAGAGAGTTAAAAAGAATACACAATGAAGATAATTCAAGGTTTAAAGATCATCCAACATTACATGAAAGATATTTATTACTTAACTTGTTAGGAAAAGGAGGCTTTAGTGAAGTGTACAAGGGCTTTGATTTAAAAGAACAGAGATATGTTGCATGTAAGATTCATCAGTTAAACAAagactggaagacagaAAAACAGGAGAATTATGTCAAACATGCAATAAGAGAATATAACATTCATAAAACACTCAATCACCCGCGGATTGTTTCCTTGTACGATGTTTTTGATTATGAAGCAAATGGGTTTTGTACCATACTTGAATACTGTGATGGCCAGGACCTGGATTTTTTACTAAAACAACATAAAACCGTACCCGAAAGAGAGACTGTAAGTGCTTTAAAGTATCTCAACGAGATTAAGCCTCCGGTAATCCACTACGACTTAAAACCAGGTAACATCCTCCTGACTGGAACTGGTGCCCTCAGTGGGGAGGTGAAGATTACTGACTTTGGCCTGAGTAAGATTATGGAGACTGAGGAGGACAGTATGGATCTAACGTCACAAGGAGCAGGAACCTACTGGTACCTCCCCCCAGAGTGTTTTGTTGTAGGTCACGAACCTCCTAAAATTTCCTCAAAGGTGGACGTGTGGTCAGTAGGAGTAATATTTTATCAAATGCTTTACGGCAAAAGGCCGTTTGGGCACAATATGACACAAGCTGCTATCTTAGAGACAAATGCGATCCTAAAGGCACGAGAGGTACAGTTCCCAGCCAAGCCTGTTGTTAGCAGCGAGGCAAAGCGCGAGTGTATTTCTGTTCACGTTGGTCAAGCCGGAGTTCAGATTGGAAATTCTTGTTGGGAACTGTACTGTTTGGAGCATGGAATCCAACCCGACGGTCAGATGCCCAGTGACAAAACCATCGGCGGTGGAGATGACTCGTTCAACACTTTCTTCAGTGAAACAGGCGGAGGGAAGCACGTTCCAAGAGCGATTTTTGTTGATTTGGAGCCAACAGTTGTCGATGAAGTGCGTACCGGAACATACCGTCAGCTTTTCCACCCAGATCAACTGATCAGTGGCAAGGAAGACGCCGCTAACAACTATGCTCGTGGGCACTATACCGTTGGAAAAGAGCATATCGATATAGTGTTGGATAGAATTCGCAAACTGGCTGATCAATGCACTGGTCTGCAAGGTTTCCTGATCTTCCATTCCTTTGGTGGTGGTACCGGTTCCGGCTTTTCCTCCCTTCTTATGGAAAGACTTTCTGTTGACTATGGTAAGAAGTCCAAGCTGGAATTTTCCATCTACCCAGCTCCTCGGGTTTCCACAGCTGTAGTTGAGCCGTACAATTCTATATTGACGACTCACACCACCCTTGAACACTCAGACTGTGCCTTCATGGTGGACAATGAAGCCATCTACGACATCTGCCGTCGCAACCTGGATATCGAGCGTCCAACCTACACCAACCTGAACCGTCTGATTGGTCAGATTGTGTCCTCCATCACTGCCTCTTTGCGTTTTGATGGTGCCTTGAACGTTGACTTGACAGAGTTCCAGACCAACTTGGTGCCCTACCCACGTATCCATTTTCCACTGGCCACCTATGCACCGGTCATTTCAGCAGAAAAGGCCTATCACGAGCAACTGACCGTTGCTGAGATCACCAACGCCTGCTTCGAGCCTGCCAATCAGATGGTGAAATGTGATCCCCGTCACGGCAAGTACATGGCCTGCTGTTTGCTGTACCGTGGTGATGTGGTTCCCAAAGATGTAAACGCCGCCATTGCGACCATCAAGACCAAACGTACCATCCAATTTGTAGATTGGTGTCCAACTGGTTTCAAGGTTGGCATCAACTACCAGCCACCCACAGTTGTACCAGGAGGAGACCTGGCGAAGGTGCAGCGTGCTGTGTGCATGTTGAGCAACACGACTGCCATTGCTGAAGCGTGGGCTCGTCTGGATCACAAATTTGATCTTATGTACGCCAAGCGTGCGTTTGTGCATTGGTACGTGGGTGAGGGTATGGAGGAGGGAGAGTTCTCTGAGGCTCGCGAGGATCTGGCTGCACTGGAGAAGGACTACGAGGAAGTCGGAGTGGATACTGGGGAGCAGGGAGAGGAGGACGAAGGAGAATACTAG

Transcript

c0120.g021.t1

Protein

Uniprot

Uniprot term	Description
P18258	Tubulin alpha-1 chain OS=Paracentrotus lividus OX=7656 PE=2 SV=1
Q2HJ86	Tubulin alpha-1D chain OS=Bos taurus OX=9913 GN=TUBA1D PE=1 SV=1
P02552	Tubulin alpha-1A chain OS=Gallus gallus OX=9031 GN=TUBA1A PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000217	Family	Tubulin	Interproscan
IPR002452	Family	Alpha tubulin	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11588	TUBULIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan