Gene detail

Detailed information of c0125.g004.t1 in Palythoa umbrosa

Genomic Location: c0125:49465...75061
NR annotation: XP_027055705.1, phospholipase A-2-activating protein-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0125.g004.t1

ATGGCCTACAAACTCAGCACCGTTCTTCAGGGACACGAGTTGGATGTTCGGGCAGTGTGCCCAGCAATTTTTCCCGAAGGAGCTGTCATAACTGGTTCAAGAGACAGAACCGCTCGTGTTTGGATTCGTTCTGAAAACCAAAGAGAATTTACCGAAGGACATGTTTTTGGTGGACACCAAAACTTTATTTCAGCAGTGTGCACTATCCCGCCAACAGAAAAGTATCCGCATGGTCTAGTTGTCACTGGAGGCCATGATAATGTTATTTTAGTATGGATTCTTGATTCAGTGGaacccttgtttacactggttggccacactggcgctgtaagttgtttGGTTGCTGGCAAATTTGGAACTCTCCTTTCTGGTTCTTGGGACAAAACAGCGCGAGTTTGGTTGGGAGGGAAGGCTATGATGACACTCCAGGGACATGAGGCAGCTGTGTGGTCTGTACAGCTCATGCCAGAACATGGCCTCATGCTAACAGGCTCTGCCGACAAAACAATTAAAATGTGGAGAGCTGGCAGCTGTGAGAAGACCTTCACTGGCCACACAGATTGTGTGCGAGGGCTGACTGTGCTGTCACATTTAGAGTTTCTTTCTTGTTCAAATGACTGTACAATCAGACGTTGGATCACCACTGGCGATTGCCTTCAAGTGTACTCAGGACACACAAGTTTCATATACAGTGTAGCTTCATTTGCTGATGAGAGTGGAAGTTTTGTTTCTGCTGGGGAGGATCGAACATTAAGGATATGGAAAGGGGAAGAATGTACCCAGGTAATCACCTTACCAGCCCAATCAGTGTGGTGTGTGGCATGTCTGGACAATGGTGACATCATTGCAGGCACAAGtgatggtattGCAAGAGTGTTTACCCAATCAGAAGACAGAGTAGCACCCCCTGAAGTTCTAAAGCAATTTGAAGAAGAAGTTGCCAGCCAAGCGATTCCTGCACAAGCAAGTGGCCAATTGGGTGATATTAAATTAGAAGATTTACCAGGACCAGAAGCTCTGCTGAGGCCAGGTGACAGAAGTGGACAAACAAAGCTGATAAGAAGAGGGAACATAACAGAGTGTCACCAGTGGAACAGTATGGCCGACAAATGGGACAAAGTTGGTGAGGTGGTAGGCGCTGCTGGTGCTGAGGGGAGTAACAGGTCTTCGGGAAAGACCATGTACAAAGGAAAGGAATATGACATTGTGTTTGACGTTGAAATTGAAGAAGGCAAACCACCGTTGAAGCTTCCCTTCAATCTAACAGATGATCCCTGGATGGCTGCACACAATTTTCTAGAACAAAACAACTTGAGTCAAATGTTTCTTGACCAAGTTGTTGATTTTATTTTAAAGAACACAAAAGGTGCAACCATTGGAACGGCAACATCCTCTGCTGGAGACCCATTCACAGGCGGCGCAAGGTACATCCCTGGGTCAGATAGAAGCTCAAGTAGTGTGGGTCAAGGAAGTACTGGAGCTGGGGACCCATTTACAGGTAGCGGAGCATATAGACCTAACTATGGATCATCTGGGGCCACAAGAGGGCAGTCAGGCGGGACTGGAGATCCATTCACTGGAAGCAGCAGCTACCAACCAACCCAGCAGGGCGCACCACCCCCTGGCAATGCCCAATTAAAATCTTCTGCACAAAACCCTTATTTCCCAAAGACGTCATATGTCACGTTTGAAAGTgcaaatgcaagtgcaaTTCTGGGAAAACTCAAAGAATTTAATGGAAGCCTTGGTGAGACGGAGAAACTAAGTGAAGAAGAGTTTGTGCATATAACAGATCTCCTGACCGCGGTGTCAAGTAGTGGGACAAGCAGTGAACCGAGTGATAAGCAGATGGCATCGTTGTCCAAAGCTCTCAACTGGCCATCAAACGTCCTTTTTCCAGTTTTGGATGTATTACGGCTGACCGTCAGGCAACCCTGGGCAGGGAAGCATTTCTGTTCCAGTGAAGATGGCGAAAGTTTTATTGAACATCTTCTCAAGTGTACAAGACAGGATGCTCCACCAGCCAATATTATGTTGGTGTTCCGAACATTAGCAAATGTGTTCAGTTTCGAAACAGGATGTAAACTAATGCAAAAGTACAGAGAAAAGGTTGTTGAGCTGTCTAACTCGTGGAGTAAAAGTCCCAACAAAAATATTCGTGTTGCTGTTAGCACTGTTCTCCTAAACTATGCTGTGCTGTTTCATGCCCATAGAGACTTTGAAGGAAAAGTACAGTGTTTAACAACATTGTCAAGTATATTAGGGAATGAGACTGAAAGCGAAGCAAGGTTTCGAGCCTTGGTTGCTACTGGAACTTTGGTATGGGAGGACAAGGAGGCGTGTTCATTAGTCCAGTCACTTGGATTGGAAAGTACTCTTGGTTCACTGTCTACGGTGAAAGACCCTGCCAAGGTTGGTGAATGTGCACTCCAAGTTCTGCTAGTCATTAAAACGTAA

Transcript

c0125.g004.t1

Protein

Uniprot

Gene family

Uniprot term	Description
P54319	Phospholipase A-2-activating protein OS=Rattus norvegicus OX=10116 GN=Plaa PE=1 SV=3
Q9Y263	Phospholipase A-2-activating protein OS=Homo sapiens OX=9606 GN=PLAA PE=1 SV=2
P27612	Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	UBD\|Other\|PFU
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09070	PFU	PFU (PLAA family ubiquitin binding)	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08324	PUL	PUL domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015155	Domain	PLAA family ubiquitin binding domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR038122	Homologous_superfamily	PFU domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR013535	Domain	PUL domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010992	Biological Process	ubiquitin recycling	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14018	PLAA, DOA1, UFD3; phospholipase A-2-activating protein	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala