Gene detail

Detailed information of c0131.g016.t1 in Palythoa umbrosa

Genomic Location: c0131:257988...297966
NR annotation: XP_031564034.1, tRNA-splicing endonuclease subunit Sen54-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0131.g016.t1

ATGTCAACTGAAGTAGACTCCAACAACACAATGGAACAAAATCGAACGGGATCTGAGTCAATGGCGGCTGGAAACAAGATGCCGACAAACTCGAATATCACGCGAGCAGATCGTAATTTTGACCATATTTTACGGTCCAAACATGAAACAAAAATTGACAGTAACTCCAACAATAACGATTCAAAACAGGGACATTCACCGTTGAAAAACGGAGATAGTTTGAATTTAAACTCGTACGAGCTTTTTCAAGACGGTCCGAGTCGCCTCAAGAGTGATTGTCTTTCGCAAGTGGCGCATCTACGTCAGTTGTTGTTACTGCATTTGGAGTTGATACAACAACAGCAAGAACAGATTCAAAACAAGGATAAAGAGTTAAATAGGTTGAAGCTTGAAAAAGAACAGTTGGAATCAAGGTTGCACAGAATGGATAGGAGAGCTGCAATGAAGAGGAAAAGATCTGATATTTATGACAGAGATGTGATACCTGAGACATCTGTACAAACAGCAAAGCTAATAACTCCCAAAAGTCGTAGAGTATCTGTTGAAAAGTTGATAAGAAGCAAGCGTGTTCCAGCCACAGCCTCAGTTACTATGACATCTAGCATGTGTGAGGATATTGGTTATGAGACAAACATGAGAACAGAGTTGCTATACCTCCACAATCGTCCTAATTCCTTTTTAGTACAAGCATTagaaacaacaacaaagaaaataatagaaaaagataaagaaGAGGTTGCAGTTCCCTCCTGGTGTTTGAAAGAAATTACTCCTCCTAAGATTGGTAAAGGAAGTATGGCAACCAGAAATTCAAGCTTGTCATTTACTGGAGAGGTTGAGTGTCTGGATGATGATGTTTACTCAAAACGGCACTCAAAGCAGGAGGTAGATgaaaaaagaaGAAAAAGGTGGGACATCCAGCATTATAGAGCAAGAAGGCAACACGAATCTCTGGAGAAGAGACATCGAGAAAGAGAAGATGCCAGATTAAAAGGAAGAAAGAGCCAGGGTAAAGACAAAGAAATAGACAACGTGCATGAAATGGCATCCTTTTTGCCTTCAGCAAACAACGTCATGGCATTGGAGATTTCTGACACCGTCCCTGTTGTGGCGTTTGGTGCACCAGTACCCCTCTGCCATGCAAGTGCCACTGAGCTTCAAGTACATAAGCGGCGGCCATGCCATGTGCCTCAGCAAGGAGGACCTAAAGAGTTTGCCCCTGATGGAAGTGAGGAGCAGATCTCTCGTCTTGAGAATGCCTTGAGTGATTACAGGACAGTGCTTGAAGAAGAGAGGGTTGTGAAAAGGAGTGGTGTTTCTGTGGGAGTGTGGAATCCAGAGAAGAAGGTTGTTGAAATTTCTTCAGAAAAGGGATCATTATGGCTATATATGGGTAGAAAAATAGCAGGAACAATGCTTGTTGATGCAGAGGAAGCTCTCTTCATGGTTGAGCAGGGTGCATTAGAAGTTTATCATGCAGGACTCCCAATGTCATTACAGCAGGCTTTTCAAGTTCTCTTGCCAGAAACCTTTGATCTGGATTGCTATCTGGTGTATGCTTATCTACTGAGACTTGGTTTTATTGTACTGCGGCATAAAAAGTGGCTGTTACTCTTATCTCCGTCATACTTATGGTTAATTCGTACCCCATTTGGAAAGTGGAATCCATGTGCAGGTGTAATGAAGGACAAAGATGAAACGTTGTTGTCAACAAATGAATCGATGGCTGTTGATGTTCTGAAGGATGATGCGGTTGACACCCAAAATATTTCAGATGAACAACTACAGCCGGAAGATACTCCAGTacctcaactatggacaggacaaaaaggatgtgttcctttagttagaccagctgatgcaacatctacagCTGCGATTTTATCCAAGCTGCAAGTTGTGAAAACACAGAGAATGAGAGACAATCAACAATCCAGGGAGCATCTGCGACAAAAGTTAGTCTTTGATGTTTACCAGCCGGGTTCTCACTTCCGTAAATCTGATCCAGGACGCCCTCATTTTACCATCTGTGTTTGCAGGTTCTCTGACCCACCTCCATCACTTGGTGTAATAACTCAGCTTTTCAAAGAAGCAAATGGGATCCCCATCAAGTTTGCTCTGGTGGACAGTGGAAAGGTTTCATTTTACAGCATGTTGGACGCAGACTTACCGACATTCATAACCACGGGATGA

Transcript

c0131.g016.t1

Protein

Uniprot

Uniprot term	Description
Q8C2A2	tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus OX=10090 GN=Tsen54 PE=2 SV=2
Q7Z6J9	tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens OX=9606 GN=TSEN54 PE=1 SV=3
A9JRX0	Male-specific lethal 1-like 1 OS=Danio rerio OX=7955 GN=msl1l1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15275	PEHE	PEHE domain	Family	Interproscan
PF16801	MSL1_dimer	Dimerisation domain of Male-specific-Lethal 1	Coiled-coil	Interproscan
PF12928	tRNA_int_end_N2	tRNA-splicing endonuclease subunit sen54 N-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024337	Family	tRNA-splicing endonuclease, subunit Sen54	Interproscan
IPR029332	Domain	PEHE domain	Interproscan
IPR031840	Domain	Protein male-specific lethal-1, dimerisation domain	Interproscan
IPR024336	Domain	tRNA-splicing endonuclease, subunit Sen54, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21027	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000214	Cellular Component	tRNA-intron endonuclease complex	Interproscan
GO:0000379	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15326	TSEN54; tRNA-splicing endonuclease subunit Sen54	-	Transfer RNA biogenesis	ko03016	deepkoala