Gene detail

Detailed information of c0143.g027.t1 in Palythoa umbrosa

Genomic Location: c0143:264990...280462
NR annotation: XP_020609255.1, putative sodium-coupled neutral amino acid transporter 10 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0143.g027.t1

ATGGCTACTGACTGGCCGATCGTTTTTAACCTCGTCAACAGTATCATTGGTGTGAGTGTATTGGCAATGCCTTTCTGCTTTCACGAGTGTGGCATAATACTTGGGCCTTTGTTAATGATTACTAGTGGTTTTCTCACTAAGTGTTCATGTGAACTGCTCCTCAAGGGAGCACAAGTGGCAAGGAAGAGAAGTTATGAATTACTAGCTTTGCACACTTATGGAACTGCAGGAAAGTTAGCTGTTCAAGCAAGTATTATTGGCCTTTTGATAGGAACTCTGATTGCATTCAATGTCATTGTTGGTGATCTTGCACCGTCAATATTTTCAAGCCTTTCTGGAGTGCAGGTTACAGGCACAGTCAGAGCTGTGGTTATGCTTGTAATGTCCCTTGGTGTTGCATTACCTTTATGTATGATGAAGAACATCCAGAGTTTGGCTGCCTTTAGTTCATTAGCGCTATTTttttattttggttttGTGTGTCAGATGTTTTTCACATCATTACCAAAGCTATTAAGTTTGTCCTGGACTCAACATGTTTACTATTTGAGGCCATCAGGAATTCTTAGATGTTTGCCAATATTCTCACTAGCATTTGCTTGTCAGACGCAGCTATTTGTTTTGTATGATTCCCTACCAGAGCCGTCAGTTAAAAGAATGCAGCATGTAGTTAATACAGCAATGAATATTGTCTCACTTATCTATTTATTGGTTGGAGTGTTGGGTTATATTTGTTTTTACGATGTTGGAGTCAAAGGAGATGTTCTTACAAACTATGGAAATGGTTTTGTTGTTGAAGTTATTAAATGTGGTTTTATGTTTTCAGTGCTTGTCAGCTTTCCTCTGATGATGTTCCCAATTAGAGAGAGTATAAACAACTTGATTACACTCAAGACAGGAGCTGGTATGCAAGACAACGTCCCTGGTTCAACAACATTCATACCTCACAATCGATTTGTGTACATTACTGTCTCAGTTCTGCTGTTGACTCTAACTGTCGGAATCCTACTGCCACACAttgaatttgtTTTAGCATTAACCGGAGCAACAATGGGTACTCTAATAGCTTTTATATATCCCGCTTCTATGTACCTCCACGTGGTTCATGAGAAATCAACAACACGACTGATGGCCAAGACTGTTGTGGTTGTGGGCCTGGTGTGCCTGATAGGAAGTACGTATTCTGTTCTTAGTGCCAGTAACAGTCACGAACACGAGGTGAAGAACATCCATCCCCCAGTTGATCCAATAAAGCCAGTTCCAGGCCAGGGAGATATCCGTTCTGCCAAAATTCAAGGCAACGTGCCAAATTTACCAGAAGTGAAAGATGGCCGAGTGAAAGCTGACGAAGACCCTGACAGCAAGCCACCTGGAACAATATCCACGACTCCACTACCAACTGTTGAGGCTCAGAAGGCAGAGGAAACAAGTAAAGTGTCGAGACTCGAGACTAAGAGAGAAGAACCAGCTACAGTTGAAGCCAAGGAAAAAGGAACTGAGAAAGACGTTCGTAAAGAGCCCCCAGTTCCCCATGCCCCAAATGCGGACAAAAAAGAGAGTCTTACTAGACAAGCTGCTAAACCTGATGGGCGTGTTTTGATGAGTCAAGCAGAGTCCGAGgagaaagaaaaggcaaaagaaaacgataaaaaggaaactgaaagagaaagcatagtgaaagTGGTTACCAGTGCACCAAAGAATTCGACAGAGACAGCCACTGAGGTTGCGGAAGAAAAAGGAAGCAAATCGGATGGTAATTTAAGAATCTTAAAGAAGAGAGACCTTAATGGCGTTACCTCGCCCGAAGCGGTTCCTACCAAGTCTCTACAAAACTCCAATATGAAAAATGAAAATCGCGTGGATAGTGTTGGAACTGCCCCAAACAATGACACGCTTAAAAGAGAGCAGGAAAATGGCAGCATTGTTGCCCGTAAACCTGTAAGGGATTTAAAGTCAAGCGAAGAAATTAAACAAGGATCAGATCACCAAGATGAAGCTGAGGAGAAAGAAAGCCGTCAAATGAATACTAATCGGTTAACACCAAAAACACacACTGAGCGTTTTTCACAAAATCTGCGCAAACTACTGGACAAGCGTGGTCGCAAGATTCGTTCGTTGGTTTTGAACCAAAAGGTAACTCATGAATTCCGTTAG

Transcript

c0143.g027.t1

Protein

Uniprot

Uniprot term	Description
Q9HBR0	Solute carrier family 38 member 10 OS=Homo sapiens OX=9606 GN=SLC38A10 PE=1 SV=2
Q5RC98	Solute carrier family 38 member 10 OS=Pongo abelii OX=9601 GN=SLC38A10 PE=2 SV=1
E9PT23	Solute carrier family 38 member 10 OS=Rattus norvegicus OX=10116 GN=Slc38a10 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22950	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003333	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015179	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14996	SLC38A10; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 10	-	Transporters	ko02000	deepkoala