Gene detail

Detailed information of c0159.g015.t1 in Palythoa umbrosa

Genomic Location: c0159:300032...317430
NR annotation: CAH3028704.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0159.g015.t1

ATGGATTACGATCATTTGGATCCTTCTGGAAGCTTAATGGagCAAATTCAAGCTCTGATTCAACCTCCGCAATCTGAGAATCAAGCGAAGaAGACAAGAAAAGTGGACAAGGATTGCAGGAAGCCAGGAAGAAGTGTGAACCATGATAACTGTGATAGCTGCGGCGAGGGAGGAGATCTGTTGTGCTGCGATAGGTGTCCCTGTGCTTTCCATCTAAGTTGTTGTGACCCTCCACTTGAAGAAGACGACATTCCAGATGGAGAATGGCTGTGTATTGAGTGCAAGGCAGATCCAGTGCGGAATTCAGTTGGTGGAGATAAAACAggagacaagaaagaagataatgaaaagaaaatggaagTTGTGGAAGagaaaaaggaagaaaATGGAAAAAATCAATCACCATTCTCTACTCTTGTTAAGCTGAGCTCTGGGAAGAACCCAACTACTTTTTCACTGCCACCAGAGCTCAAGTGCAACACCATATTTCCAGGTGATAGAAAAAGAAGAAACAGCAGTGATGAAAAAGTGCCGCCTGCTAAGAATGGAAAAAGGAATGGTGAAGAAGATGAAAGCTCACTGTGTAGTAGACTTTGTTTTCAGTGTAGCAGAACCGAACAGTGTGGACAACTGGTACAGTGTGATTTCTGTCCACTGGCTTTCCATGCTGACTGTGTCAACCCACCACTTACCACTGTTCCAAATGGAATGTGGATGTGTCCAAATCATGCCGAGCATGCTGAGCCAGGGTTAAGAGATCCTCGTTTTACCAAAAGGTGCCAAGCATACAATGAACTACGTAACAATGTGTCACAGCATACCATCAAGTTGAACTTCTTGAAGAAAGTTAGAAGGATAAAGACACACCCAGCTTTCAGGAAAAAGGGGATATTGCCAACACGAAGAAGAGCATCCCTGGTGCCTCAGGCAATAAAAGATCATTATTCCAGCCCACCATTGATGTACTTACCAGAGCACGTTAGGAAGATGCAGGAACCTTTACCAATGAACGAGTTGCCACTTTCCACACCAAGTACAGAGGATCAGGAGGAGTGGTTGCGTGGCATCATAAACTTGCAGTGCAGTATTGCCAAACATCTTTCACAAACAGTAACTCAAAAGCTTCCAGCTGTTTCACAGAACACAGTTTCCCTGGATAATCATCCAAACTTGAAGCCAGAGACAAGCACAGCATCTTCAACAACTAAAGAAAATATTACTACAACTTGTACCTCGACAACATCAACTACCGTTCACACAACAACAGCTGCAAAACCATCTGTTAGCTCCGCCAGTGATACAACAGGTTGCAGTTCAAATACAAAAAGTGAATTGCCAAACAGTGTGCCTACGCCGAACTCATCAAATGCAGTTCCAAATGCTTGTCTCAGTAGAGTTGTCACCACTACAATAACCACTTCTAGTGGTGGGAAAACAGTGACTAAACCGTTAACGATTCTTTATGCTTCACCATCGAAACTTGCACCTCATGTGAATGGACATGTCTCAGCTAATTGTTCAAAGCCTGTTTGTAGCACAGTTCAGGGATCACAGTCATCTAATGTTGGTGCAACATTAAGTGCTGGAAGTTCTACAGCGAAAGTTGTGGTGAAACAAGAACGCAAATCTAGTCTTTGTAATGACATTGGTCATTCTGCAAgtactagtagtaGCAGTACAGAAAAGCTGCTTAATGATGTGGCAGGCCACCTTAACAATATTAAACCAAAATTACCCCTTGATGGGGTGAGAACTCCTGCTCCAACCACAACTGGTAGCTCAGGCAGTGGGACAGTTTCCAACTCTACTGCAAAATCATTAACTTTATCACCAGCATCAGCTGCTTTGACCTCTTCAGCTGGCATAGCAACTGGTGCGACAAAACTTGCTTCTGCTTCCACACCTACAAAATTGATTGTTCTCACAAGTGGGACAGGGGGAAACATAATCAAAACTATTGCAAGTGCCGGCTTTGCTGGAGGTGCTGCAGCACAGCTCCCCAGTGGGGCTATTGTAAGTTTAGCAACAGGATCAACAACGGGTACTGGCTCACTCCGTTCTGTGGTGGGAACGGTCAATCCAGGTTCGACAAATTTAAGTCCGGGACGGATCCTACAGGGTGCATCCTCTACAACTCCAGTTGCTACTTCAAGTGCAATTAACAACATCTGTGCAGCAGCAGGGGTGGATGCATTTAGTGAAACAGAGCTAGGAAAACTGGATCCGAGACTTATCCAGGTGTTAGCATATCAACGACTGcagcagCTGCTGACTCAAGCGAAGCCTGTACCTCCGAGTCCTGTTGCAGCAAGGAAAATAACATTTAATGGATTGAAGGAGTCACTTGTGCTTCCACAGCAAACTTTACCCATTGGGAAGACAATTGCTGTGCTTTGCCCTCTTACGGGAACTGGTCCTATGTCCCCTATGATACACAAGTGCCTTACTATTGGCCAAGGAACAGATGTCGATGTTTGTTTACAAGACTATGGTCACTGTAACTTTGTTTCGGAAAAGCACTTTTGCATATTTTACGACGGGTCATCCAAACAGTACGAATTGATAAACTACAGCGAACATGGCACCTACGTGGACAATGTTCTGTATTCTTGCGATTTCTCTGACAAACCAAACAGACAGGTGACTTCGACTAAGGACCTGGACCCGAAAAAGGTTTCTAAAGAACGGCTTTTAACAGCTGCACAGGAAAAGCaaaacccCAAACCCAGAGGAGCACGGAGAACTGTCGGGTTAGGCGTGCAAAAGATCACAAAAACATGCAACTGTACAACAAGTAGCTCAAATTTAATTGGGGGCAGCGGTGCAGGCTGGGAAGGGACGGCGCTGTTGCATCATGGGAGCTATATAAAGGTTGGCTGTATGCAGTTCATTTTCAGTATAGCAAACCATGCCAACAAAATTCCAGTCAGTTCAAAAACCAGGTCTGCGACGGTCACATCTACGACGCCCACCAAGACCGCAGCCTCTTCGTAA

Transcript

c0159.g015.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q5SPL2	PHD finger protein 12 OS=Mus musculus OX=10090 GN=Phf12 PE=1 SV=1
Q96QT6	PHD finger protein 12 OS=Homo sapiens OX=9606 GN=PHF12 PE=1 SV=2
Q09819	Uncharacterized protein C16C9.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.05 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16737	PHF12_MRG_bd	PHD finger protein 12 MRG binding domain	Domain	Interproscan
PF00498	FHA	FHA domain	Family	Interproscan
PF00628	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038098	Homologous_superfamily	PHD finger protein 12, MRG binding domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR000253	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR031966	Domain	PHD finger protein 12, MRG binding domain	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46309	PHD FINGER PROTEIN 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070822	Cellular Component	Sin3-type complex	Interproscan
GO:0140110	Molecular Function	transcription regulator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26244	PHF12, RCO1; transcriptional regulatory protein PHF12/RCO1	-	Chromosome and associated proteins	ko03036	deepkoala