Gene detail

Detailed information of c0194.g001.t2 in Palythoa umbrosa

Genomic Location: c0194:20311...24286
NR annotation: XP_028408492.1, uncharacterized protein K02A2.6-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0194.g001.t2

ATGTCTACAACATTACCGCCATTCCCTTCATTTGATATTATCCAAGACCAGTCATCTATTGCCCTTCGATGGAAGAAATACGTAACACGGTTCGTGGCCTTAAACATCAACGACAAGAAACGACAGAAGGCACTACTACTTCATTATATCGGAAACGATGTTAATGATATTTTTGAAACGCTTCCAAATACCGCGGCTACAGGATCCAAAGACCCGCTGAAGAAAGCAATAGATGCCCTCACGGCCTACTTTACGCCGCAGAGAAACGTAGCATATGAAGAATACCAATTTAGACAGGCAAAACAAGAAACTGGCGAAAAAATCGTGGCCTATTACACGCGTTTGAAGCGCCTTTCAGAGACATGTGAATTCACCGACTCAGACAGAGAAATTAAATCACAGATCGTCCAGCATTGCAAGTCAACAAAACTTCGACGGAAAGCCCTAACAGAGCCAGACATCACTCTGGACAAGCTACTAGATTATGGGAAGACGCTAGAACTAACCAAGACCCAAGTTGCTGATTTAGAAGGTCAAAATGAAGGACAGAAAGTTAACAAACTTCGCCGAGATCaaaaaccttccaggaatcaaagaaataacaggaatGGAACCGGGAAGTCTGGAACGGAGTACGAAAAAGGGGGAAATTGCGGATCGCGCTCAGGGAGCTCaaaatgcagaaattgcggaGGTTCGTACCCACACGAAGGGGGAAAGACATCCTGCCCTGCCTACAGCAAGGAGTGCCACAACTGTGGCAAGAAAGGTCATTTCATGGCAGTTTGCCGGAGTGAGGCCAAACCAAAACAACAGCGTTATCAAGAGAGGAAACCGGTCAAAACCTTGGAGGACTACAGTGACAGTGACGACGAAAACACCTTCAGGCTTAGTGTGCACAGCGTTAAAGGAACCAAGGCAAAACACCCTATATTCAAAATAAAATTACAGGGAAGCTGGATGGAGCTTATGGCTGACTCTGGATCGAGCATTAATCTTCTCGATGAGAATGACTACAGGAAACTGAAAAACCGTCCTAAATTCCAGAATTCAACAGCCCGCGTCTATCCATACAAGTCAAGCAAGCCCTTGGAAATGCTGGGAAAGTTTGAAACAATCCTGAAGACCGAAGACAAGGCGACGTCACGTGAGGTTATACATGTCACGAAAGGGGCTGGTGGATCCCTTTTGAGCTGTCACGCCTCTCAGAACCTAGGCCTCATAACTATCGCAAGCCTATCGGCGAGTAAGTCTAGACCAGAGATTAATCAACTGGTGCAAGATTATGACgacctcttccatggacttgggaagctcaaaggctaccaagtacaccttcacatcgacgaagacgtccagccgtccgcacaaccacaccgacgagtaccgtttcacgtcaggaaacaaatcgaggagcagctagaaaaggacaagaaaaacggtgtcatagagcgcgtggatggaccgacgccatgggtctcacccgttgttgtagcgcccaagccccagcaaccaggcaaaatacgcatgtgtgttgacatgagacaaccaaacaaagcagttcagcgcgagcgtcacatcaccccaacaattaaggaagtaattggagatctcaatggagcaacgacattcagcaagcttgatctcaatcaaggatacaaccagttagaacttgctcctgaatcaagatacatcacgacgtttagcacacatgtcggactgagacggtacacacgtcttaactttggaatttccagtgcggcggaaattttccaaaacgcaattcgtgaaactctcagtggcatacaaggtgctataaacttgagcgacgacatcctggtgtatggaaagacacaggaagaccacgacagagctctacgggaaacctttcaacgtatcagagagaaaggtcttacccttcaccgagacaaatgtgagttctctcaagacagcctcacatttttcggatacgtgttctcagctgaaggcatttcagcagacccgacgaaggtggaggcaataaccaacctccagctaatgcctcagaaatacgcagccttcttgaagctcaagaccgctctagcacaagcaccagtaacagcctacttcgaccctgacaagcgcacggaaatcagcgtcgacgccagtccttttggacttggggcgatactcgcacaaatagatcccaacaccggcgacaaacacgtggtcgcatacgcaagcacatgcttaacctcagttgagcagcggtacagtcagaccgaacgcgaggcactggccgtcgtctggggctgtgaatacttccacttgttgatctatggcaagcccgcgaccgtcataacggaccacaagcctctagtcacgatatacagcaatccaaagtcaaagccgccggcgcgcatagagagatggtgcctgcgccttcagccgtaccaagttacagtcgtataccagcaaggcgagggaaatccggccgactatatgtctcggcacccaactaagctatcgcttccaagcagcagacaggagcgagtagcagaggatttcgttgattacatcacgcacgcagccaaaccgaacgccctgaagttagaagacatctcacaagcaaccatcgaggatccaaccctgcaagcagtcagagacgccgtacgcacaggcaactggtacgagccgtctaaatatctcaacatcaaccacaatacctacaactccttagagcgagttaaggaagagttgacggtgtgcagctcgtctagtgtgattctgcgtgatagacgaattgtgatacctgaagccctccaatctaacatagtcaacttggcgcacgaaggccatcaagggatcgcctcactgagggagaaggtgtggttttcaggcattgacaaagtggtcgaagcgaaagttaagtcttgcctagcgtgtcaagcagcaacgccagtaacgaaacgggaaccccttcaaatgtcaccactgccagacggaccgtggaaggaggttagtgtggacttcaaggaactttcaggagaaggataccttcttgtgacctatgatgactattccagatacccagtggttgaggtggtaccatctgtagcagctaaagttgtggtgccacgacttaacaaagtattttctgagttcggtgtccctgaagttgtacgctcggataatgggccaccattcaacggaaaagagttcagcaattttgcgtccgtccttgggttcaagcacaggaaggtgacgcccctctggcctcgtgcaaacggagaagtagaaaggttcatgcggacattgaagaaaactatCGAGGCAGCCAGGGTGAACAGTTGCCCGTGGAAAGAAGAACTCTGTGATCTGTTACGCAACTATCGAGCGACACCCCACTCATCTACTGGTAAAGCACCAGCAAGCGTGTTGTTCGATCGCCCTATGCGAGTGAAGTTGCCTCAAGCACCTCAGAGCAAGAAAGACCCAGCGCAAATACTACATCGAGACGCCCTGTCAAAAGAGAAGATGAAGGAATATGTGGACCGCAAGGCACATGTTACACCCAGTGACATTAAGGAGAAGGACATTGTTCTAGTGAAGCGCGACCCATCACGCAAATCGTCGGGCACACCGTACGACCCGAAACCTTATCAAGTGGAAAGTGGTGATAACGATCCTACCTCAGAGGACGAAATGGAACCACGCAGATACCCTACAAGGAGCTCACGTAGACCACCCGCATTCTTGAAGGACTATATTTGTTGA

Transcript

c0194.g001.t2

Protein

Uniprot

Uniprot term	Description
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P63132	Endogenous retrovirus group K member 113 Pol protein OS=Homo sapiens OX=9606 GN=HERVK_113 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan