Detailed information of c0202.g019.t1 in Palythoa umbrosa

Genomic Location: c0202:118277...134649
NR annotation: CAH3024884.1, unnamed protein product [Porites evermanni]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P29375Lysine-specific demethylase 5A OS=Homo sapiens OX=9606 GN=KDM5A PE=1 SV=3
Q3UXZ9Lysine-specific demethylase 5A OS=Mus musculus OX=10090 GN=Kdm5a PE=1 SV=2
P41230Lysine-specific demethylase 5C OS=Mus musculus OX=10090 GN=Kdm5c PE=1 SV=4
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan
PF02373JmjCJmjC domain, hydroxylaseDomainInterproscan
PF21323KDM5_C-helLysine-specific demethylase 5, C-terminal helical domainDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF08429PLU-1PLU-1-like proteinFamilyInterproscan
PF02375JmjNjmjN domainFamilyInterproscan
PF02928zf-C5HC2C5HC2 zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001606DomainARID DNA-binding domainInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR003347DomainJmjC domainInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR003349DomainJmjN domainInterproscan
IPR048615DomainLysine-specific demethylase 5, C-terminal helical domainInterproscan
IPR013637DomainLysine-specific demethylase-like domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR047970DomainLysine-specific demethylase 5A, second PHD fingerInterproscan
IPR004198DomainZinc finger, C5HC2-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10694LYSINE-SPECIFIC DEMETHYLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0032452Molecular Functionhistone demethylase activityInterproscan
GO:0034647Molecular Functionhistone H3K4me/H3K4me2/H3K4me3 demethylase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11446KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylaseEC:1.14.11.67
Chromosome and associated proteinsko03036deepkoala

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