Detailed information of c0220.g006.t1.p1 in Palythoa mizigama

Genomic Location: not available for this species
NR annotation: XP_031567678.1, DNA polymerase epsilon catalytic subunit A-like [Actinia tenebrosa]
Species Palythoa mizigama · all data for this species · gene families

 Sequence
No sequence record for c0220.g006.t1.p1 in PMIZI (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q07864DNA polymerase epsilon catalytic subunit A OS=Homo sapiens OX=9606 GN=POLE PE=1 SV=5
Q9WVF7DNA polymerase epsilon catalytic subunit A OS=Mus musculus OX=10090 GN=Pole PE=1 SV=3
Q9VCN1DNA polymerase epsilon catalytic subunit 1 OS=Drosophila melanogaster OX=7227 GN=PolE1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002984 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for c0220.g006.t1.p1 in Palythoa mizigama.
 InterPro
InterPro termTypeDescriptionSource
IPR029703
all species →		FamilyDNA polymerase epsilon catalytic subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10670
all species →		DNA POLYMERASE EPSILON CATALYTIC SUBUNIT AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000278
all species →		Biological Processmitotic cell cycleInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003887
all species →		Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006260
all species →		Biological ProcessDNA replicationInterproscan
GO:0006272
all species →		Biological Processleading strand elongationInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006287
all species →		Biological Processbase-excision repair, gap-fillingInterproscan
GO:0006297
all species →		Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0008310
all species →		Molecular Functionsingle-stranded DNA 3'-5' DNA exonuclease activityInterproscan
GO:0008622
all species →		Cellular Componentepsilon DNA polymerase complexInterproscan
GO:0045004
all species →		Biological ProcessDNA replication proofreadingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for c0220.g006.t1.p1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Palythoa mizigama tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Palythoa mizigama, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.not in the sequence tableopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.not in the sequence tableopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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