Genomic Location: not available for this species
NR annotation: CAH3115109.1, unnamed protein product [Pocillopora meandrina]
Species Palythoa mizigama · all data for this species · gene families
c0247.g014.t1.p1 in PMIZI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| G5EBX9 | Serine/threonine-protein phosphatase with EF-hands pef-1 OS=Caenorhabditis elegans OX=6239 GN=pef-1 PE=1 SV=1 |
| O14830 | Serine/threonine-protein phosphatase with EF-hands 2 OS=Homo sapiens OX=9606 GN=PPEF2 PE=1 SV=2 |
| O35385 | Serine/threonine-protein phosphatase with EF-hands 2 OS=Mus musculus OX=10090 GN=Ppef2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007015 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00149 all species → | Metallophos | Calcineurin-like phosphoesterase | Domain | Interproscan |
| PF08321 all species → | PPP5 | PPP5 TPR repeat region | Repeat | Interproscan |
| PF13499 all species → | EF-hand_7 | EF-hand domain pair | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| IPR006186 all species → | Domain | Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase | Interproscan |
| IPR004843 all species → | Domain | Calcineurin-like phosphoesterase domain, ApaH type | Interproscan |
| IPR018247 all species → | Binding_site | EF-Hand 1, calcium-binding site | Interproscan |
| IPR013235 all species → | Domain | PPP domain | Interproscan |
| IPR051134 all species → | Family | Protein Phosphatase PPP | Interproscan |
| IPR000048 all species → | Binding_site | IQ motif, EF-hand binding site | Interproscan |
| IPR012008 all species → | Family | Serine/threonine-protein phosphatase with EF-hands | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR029052 all species → | Homologous_superfamily | Metallo-dependent phosphatase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45668 all species → | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004721 all species → | Molecular Function | phosphoprotein phosphatase activity | Interproscan |
| GO:0005506 all species → | Molecular Function | iron ion binding | Interproscan |
| GO:0030145 all species → | Molecular Function | manganese ion binding | Interproscan |
| GO:0050906 all species → | Biological Process | detection of stimulus involved in sensory perception | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13807 | PPEF, PPP7C; serine/threonine-protein phosphatase with EF-hands | EC:3.1.3.16 | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Genes whose expression across the transcriptome samples of Palythoa mizigama tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Palythoa mizigama, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
