Detailed information of c0302.g008.t1 in Palythoa umbrosa

Genomic Location: c0302:83338...113302
NR annotation: CAH3037837.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5WR10Spliceosome RNA helicase DDX39B OS=Canis lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1
Q13838Spliceosome RNA helicase DDX39B OS=Homo sapiens OX=9606 GN=DDX39B PE=1 SV=1
Q5TM17Spliceosome RNA helicase DDX39B OS=Macaca mulatta OX=9544 GN=DDX39B PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF01607CBM_14Chitin binding Peritrophin-A domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan
PF00530SRCRScavenger receptor cysteine-rich domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR002557DomainChitin binding domainInterproscan
IPR017448DomainSRCR-like domainInterproscan
IPR014014DomainRNA helicase, DEAD-box type, Q motifInterproscan
IPR001190DomainSRCR domainInterproscan
IPR036772Homologous_superfamilySRCR-like domain superfamilyInterproscan
IPR036508Homologous_superfamilyChitin binding domain superfamilyInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR013106DomainImmunoglobulin V-set domainInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0008061Molecular Functionchitin bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006406Biological ProcessmRNA export from nucleusInterproscan

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