Detailed information of c0306.g023.t2.p1 in Palythoa mizigama

Genomic Location: :...
NR annotation: CAH3108575.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q2KHP8S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Xenopus laevis OX=8355 GN=tyw1 PE=2 SV=1
Q8BJM7S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Mus musculus OX=10090 GN=Tyw1 PE=1 SV=1
Q08C92S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Danio rerio OX=7955 GN=tyw1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04055Radical_SAMRadical SAM superfamilyDomainInterproscan
PF08608Wyosine_formWyosine base formationFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR034556FamilyS-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthaseInterproscan
IPR007197DomainRadical SAMInterproscan
IPR013917DomaintRNA wybutosine-synthesisInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13930S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0051539Molecular Function4 iron, 4 sulfur cluster bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0051536Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0031591Biological Processwybutosine biosynthetic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15449TYW1; tRNA wybutosine-synthesizing protein 1EC:4.1.3.44
Transfer RNA biogenesisko03016deepkoala

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