Gene detail

Detailed information of c0329.g013.t1 in Palythoa umbrosa

Genomic Location: c0329:148939...170394
NR annotation: XP_031551582.1, receptor-type tyrosine-protein phosphatase S-like isoform X3 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0329.g013.t1

ATGGCGAAGCGTACAAACTTCCATTTCCGGGTGGTCTTCGCTTTGGGTCTCCTTCATTTAGCTCATCCTGTGTATGGGGGATGCGGCGAATCCCAAGTTGGCGTTTCTGATGCTGACAAAATTCAAGATAATCAAATTACCTCGTCTGATGGCGGAGACACTACCAGCACTCCAGCCAAGAATGGACGGCTGAACTACGCAGCGGGCCCATCGTGGTGTGCTCCATCTAGTAGAACCTCTCCATTCTTACAGGTTGATCTGAAGGAGGTTTACATCATTTGTGCTGTTGCCACCCAAGGGAATTCCAGAGCGGACCAGTGGGTCAAATCCTACCAAATACAGTACTCCACAGACAAACAAGCATGGTCCATTTATAAGGAGCAGAACGAAGAAAAGACATTTCATGGAAATTATGACCGCAATACCGTGGTTAAACGTTTTATGCACGAGGGGATTCAAGCCAAATACATTCGTGTTTATCCAAAGACAAATCACGGAGGAAACTGTATGCGGTTGGAGCTTTATGGGGTTACAAAGACAGCGTGTGCTGCAAAAGACATTGGCGTTTCCAAGGACGACATAATCCCAGATTACAGATTTACCGCATCCTCCTTTTACGTCAATGAAGACTATCCTAAAGAATATGCACCATATCAAGCCAGGCTAAACGGAAAGTATAGCTGGACGCCGAAAGGTTATGAAAAAAGTACAGGTTCACTCAACATTGACCTCGGGAGTGTGTACATATTATGCGCCATAGAGACTCAAGGTTACAGGACAAAAATAGAATGGACAACCCATTACCAACTGAATATTTCCAAGGATAACTTAGCGTGGCATACATACTCGGAGATAGGACAAATTAAAATGTTTAACGGCAATAAGGACGGGGACAGTCGCATCAAAAACACACTACAGAACATGGCAGTAGCCAAAGCGATTCAGGTGTTGCCCAAAAAATTCAAAAACTGGCCTTCACTCAGAGTAGAAGTCTACGGCACCGTTCAAGGATGTGCATCCTCTCTGGGGATTGAAAGATCAGTTGTTGCTAATTCTCAGTTAAGTGCGTCCACGGGTACAGCAGAAGGCGGTAGACTTTATAACCAAACAAGCGCTTGGTGCAGCAATCATAAATCTACCACGGAGTACATTCAAGTTGACCTGAACAGCTTTGCTATGGTAAGAGGCGTGGCTACACAGGGCCACCCGGTAAAAAACAGTTGGACAGAAGTATTCAGCATCAAATATTCTTTTGACAACAAGGCATGGCAAAGTTTCTATGATAGTGCAAGTTCGAGCGCTTGGAAGAGATTTACAACAGCAAGTAACCAAAATACTGCGAAAGTAAACTGGTTTAGATATCCTTTTGTTGCCCGCTACGTTCGCATTTATCCACTGGAATGGAAAAATGAGCCCTGCTTGAGATTCGATCTTTATGGCTGCAATTATGTGAACTTTCCAAAAGCTGCTTTAAAAGTTGTTGACGTCAAAGCAGCTTCTGAGGGCAACGTAAACGTCAACTTGGAGTGTCAAGGACGTGGAGAACCGGTACCTAATATCAAGTGGAAGAATGCACCTACAGATGTGATTAGAAAAGCACAACTAGTGCGACAAAATGAATTTATCGTGTCAAAAATTTCTGTAACGTTTCCGTCGAGTTCTTGCTCGAGGCAGAATTCTCTAAACAGGACTGTTGTTTGTAACCTACCAAGCTATGTCTGCCAGGTGTCGTACCCGCTGGGACACGGAGGAGCAATGGTTACTCAGACTTCAACAACTGCAAGCTTAGATCTTCCCGATGTGGTCAAAGATCTCCGTACCAGTAAGATACAAGCTCGATCAGTTACCCTTGCATGGACAGTCCCTAATTCCGGGCATGCTGCAATTACATCATACACTATATGGTACAGTGCAGAAGGGACACAAGGTAACATCAGCATCATAAGTAAAACGAATACCCGCACCTTTGTGTGGACTGGTCTTACGCCGAACACGAACTACACAGTGAAAATGGCGGCAGTGAGTGCGTTGGGTGATGGGATGCAGTCTGGTGATCCGTTACATTTTAGGACAAAACACGCAGTACCGAGTAAGGGATTTGCAACTGAGATAATTGCTGGGGGTGTTGCTTCCTTCCTATTCGTtgttcttcttctGGTTATCTTACTTATAATAGTTCGAAGACGAAAGAAACGAGGCGATACTAGAAATTCAAGACAAAAAGAAACGAAGTTAAAAACGTTACCTAACAATGGCAGCCATCAGAACTCATTAGATGAAGAACGCGGAAAGGTTATTGGAGACGAGAGTCGTCATTCGCCATTGGAAATGGCAGCAACGGAAAACGAAACAAATAGCGATGGAGTTGAACAGAAAGAtgagccggaatctgagactgaatcAAGTCCCTTGTACGGCAACGTTTTGGATGAAACTGAAAGACGACCAATACCAGTTTGCATGTTTTCTGAATTTATGAATAGAGAGAGAGTAGAAGACTTCGGAAGGTTGTCAAAGCAATATTTGACCTTGCCAGAGGGAAAACAATTCCCATCAAAGGAAGCAGAGAAaaaagaaaacaaaaaacTGAACCGTTATGCTAACATGAATGCCTACGATCACTCCCGTGTAATGGTGGAGCCCGCAGACGGAGTAGCATATATCAACGCCAACTATATTGAGGGTTGGGATGGAACACCAAAGACATACATTGCAACTCAAGGCCCCCTTCCGCCGACATTTCCCATATTTTGGCTCATGGTGTGGAATGAAAAAGTTAGCTGCATTGTTATGGTAACAAATATCGTAGAAAATTCAAAGACCAAATGCCATCAATACTGGCCAGAGAAGGCTTCAAGTTATGGAGTTGTGCACGTGTCATTAAGCAAGGTGGAAGTGTTTGCCGATTTCACAATCAGAACTTTCTCCTTAACTAAGGACTCGGAAAGTCGTAACATTGTTCAGTTCCACTTTACTGTATGGCCGGATCATGGAGTCCCTCGACTTCCAACTAGTATCGTAAGTTTGAGACGTCGTGTTGTATCAAGGACGTCCAGGACAACAGGCCCAATTCTTGTACATTGCAGTGCGGGAATCGGAAGATCAGGAGCCTACATTGCTATTGATGCTATGTTGAAAAGAGCAAAGACAACGAAAGACATcgacatctacagctacaCGGAGATGATGAGAAAAGCTCGCATTAACATGATTCAGACAAAGGAACAGTATATTTTTGTTTACAAAGCAATTCTAGAGGCTGTCACGTGTGGTAACACAGAGATCAGTGCACAAGATGTGCGGGTTTCTTTGAAAAAACTAGCAACTGTTGATACGCATCAAGGGAAGACTGGTTACGAGGAAGAGTTTGACCGTCTGGGGACTGTCTGCCCTAACGCCAGACCAGACGAGTGTGAGACGGCTTTTATGCAAGAAAATCTGAACAAGAATCGCAGTCAGGAATGGGTTCCTCGTAAGTAA

Transcript

c0329.g013.t1

Protein

Uniprot

Uniprot term	Description
B0V2N1	Receptor-type tyrosine-protein phosphatase S OS=Mus musculus OX=10090 GN=Ptprs PE=1 SV=1
Q64605	Receptor-type tyrosine-protein phosphatase S OS=Rattus norvegicus OX=10116 GN=Ptprs PE=1 SV=2
Q13332	Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens OX=9606 GN=PTPRS PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan