Gene detail

Detailed information of c0330.g014.t1 in Palythoa umbrosa

Genomic Location: c0330:204218...213988
NR annotation: XP_020618143.1, protein Smaug homolog 1-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0330.g014.t1

ATGAAACCCGCACATACGTATTTCAGAGACCAAGTGAAGACATTAGTTGATTGGTTCTCAAACTGGAATGAGTGCGAACAGACAATCGCTCTTTACACATTGCTCAAAAGAATATCGACAACGCAAGCCCAGTTTCTCTCACTGATACTGCAGCACACATTTAGAAATGATACTTTGGAATTGCAAGTATTACAGAGTCAAGCAAATGACAAAAAATTTGTAACCAGGTTGAGGCAGCAGAGCATCGAGGAAGCAGTCACACAACTTCTGGCACACCTTCCTTTACTTGTCCCAGGAAATGATGAAGCTCGTTATGAATATCTTCAGTTGCTACCAAAAATTTTAGCCCACAGTGTTGATAACTCAGTACATCAAGATGAATGTATGCAATTGCTATCGCTTGCTCTTGTTCACCCTGCATTTCCTCAGGAGGAACGCAACTCTTTGCTTAAGTGGCTGAGCCACTTAGAAAAGAACTACAGTGTTCAGGAACAGCAGCGCTCCCAACTGAACCGTCATGGAACAACAGAAAGTGACATACAGCCCAATACTGGACTTGAGAACCTCGTGCGGGCACGTAGTAAACGAACAAACAATATGACATGGACCAGAAAACAGCCACTAACACACAAAGACTCTGGTCTTGGGTCTTCTTTTGATGCCACATCGACATATTCACCATCATCTATTCAATCGTTCGGCTCGTCATTTGGCTATGGATCAGGGATTCGAAAATCTCGGTCCAATTCCTTGACTCCTCCTCCACCCATGGATGTATCACAAGAATCAATCCTTGAAGATTTTAACGAGGAGGCAGAGGTGGAAATACGAAAGGGCAGGTCCCGATCATTTCCTGTTGATCCACAGAGGCAGTTTCAGCTATCACCTCAGTCGTCAACTGAGAGTGAGCAAGATGACTTTGGTAGACAAAGGGGAAGTAGCTTCAATGAAGAAGCTCGGCCAGGCATGAAAGATGTGCATGGATGGCTTAAAAGTTTACGTCTGCACAAATATGACAGCCTTTTCCAGCAACTTTCATATGAAGAAATGATGACTCTTGAAGAAAACTACCTGGAAACcaagAATGTCACAAGGGGAGCAAGGAACAAGatattgacaaacattcaaaaaCTTTCAAAAAGGTCAGATAATTTGCAGAACCTCGAAAAGGATGTTTTACAAGTTGGTAAGCTACAGGATGTGTTGAATGAGATGAAGCAGATACTAGTTACACCTATCAAGCCATTTACACCACCTGCGGGACCAGTAACAACTCCATCATCAACAAACCAAGGAATAGGAGGAACCATGACTGAGCAGCCAATCGCGAATGGCCTACCCCATCCGGATGACTTACCATCTCAAATTACAAGAGTTCTTGGAAAAGCATGTACACAGATACTGGTGTCGCGAGCTGATGAGGACAACTGTAACATGTACTTGCATCTTTTGGATAGAGCTCTTGTCAATGAGGCATTTACCATGACTCAGAAAAAGAGATTCCAATCTTGGAAGCAACAATGTCTAAAGCTTGTGAGGTCACAGTTCACTAGAAGGCCATCACAGGAAAAGGGTCCCAGAGGTTGGTGCCACATGTCTCATGGATCGGGTGACTCAAGCAGTGGTATAGTAGGCCCCGTGGCAGGTCCAGGGGGGCCAGCTGGTAAGCGACATGGTAGAGCAGTACCTCGCTCAAATAAAGAAAGGCCAGCAAACCAGATGAGGAGTAACAGTGCAGAGCAGCAGATACACCAGAAGCCACAACTGACAAGGTCACATGCAATTATTGGTCGGACCAAAAGTCTTCCAGTCAAACCTACCCAGCAGCATTCATTCTCACTTCCTCAGCAATTTTCAGCTGACTATGGTGACAAAGATCCTGGACTTGATGGAATTGATAACAGTTTTGAAACTTTATGTCTGAGTGTGACGGAACATGCTTTAGAAGTGGCTGTCAGTGACTTGGCAGTACCTTATGACAAATTGGAGCTGCCATTAAGAGTTAAACGATTGACCATCGTCAAGTGTTCCTAG

Transcript

c0330.g014.t1

Protein

Uniprot

Uniprot term	Description
Q8CBY1	Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a PE=1 SV=2
Q95LV5	Protein Smaug homolog 1 OS=Macaca fascicularis OX=9541 GN=SAMD4A PE=2 SV=2
Q9UPU9	Protein Smaug homolog 1 OS=Homo sapiens OX=9606 GN=SAMD4A PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR037093	Homologous_superfamily	Smaug, PHAT domain superfamily	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR050897	Family	SMAUG/VTS1 RNA-binding	Interproscan
IPR037634	Domain	Protein Smaug, SAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12515	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0043488	Biological Process	regulation of mRNA stability	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27396	SMG; protein Smaug	-	Messenger RNA biogenesis	ko03019	deepkoala