Gene detail

Detailed information of c0338.g001.t1 in Palythoa umbrosa

Genomic Location: c0338:22309...25623
NR annotation: CAB4024957.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0338.g001.t1

ATGAGATCGTCGGATATTGCTACATTGCTGGGAAATGAAGTCAGATATCGTGAATTTACCCAGGCAAAGAAATCGCAAGTAATCTATCGCCTAAGCTCCAGTGGCCCCTCGCAGCTTGCCATGCTGCTATTACTTGGAGGAGACATTGAAGTTAATCCCGGTGACAAGCGAGGGAAGAAGACTCCCTGTGGCATTTGTTCGAAAACGGTTAGGAAGAACCAACCAGGAATTCAGTGCGACGAATGCAGAAATTGGTTTCATGTAAATGCAAATTGCTATGAAATGTCGCCAACTATATATAACATCTTGAAAAACAGCTCTTGTGCCTGGATTTGTCCACAGTGTGGTTTACCAAATTTATCGGACTCGTTCTTTGATAGCTCAATGGATTCCTTTAATTCATCAAACTACTTTGAACCCCTAAACTCAGCGCCCGAATCATTACCACCGAGCCAATCTCGTTTACATAATAACAAGAGTAAACAGAAACCAGTCAGGCGGGGAAATTTAAAATGCTTAGTTGTCAACTGTAGAAGCGTTAAGAACAAAATAGCAGATATTGCCGTCTTGATAAACGAACACAAGCCCGATATTGTTTTTGGAAATGAGTCTTGGCTGAAACCCGACATTAAGAACAGCGAAATCTTTCCTGAAAATTACAAAATCTATAGGAAAGATAGAGACAACAATGGCCGTGGCGGTGGAGTTTTCCAGGCAATAAAGAACGACTTGATAATAACTCATCACACTGAATGGGACTCAGACTGCGAGATTGTCTGGTCCCAATGCCAACTGGCTGGAGTTCGAAATGTAAAATCAATCTATTTTGGATCGTATTATCGTCCAAataaatctgatttggTCGGTATCGACGAGCTGAATGTTTCACTATTGAAAATGGGAACTACTTTGCATAAGAACAATGTGATACTCGCCGGCGATTTCAATGCTCCAGATGTTGATTGGACCAATCCGCCTGATTCTGATAAACTGACATCTGCGTCCAAAAAGCTTCTCGAAGTATTTGAAGACCACGATCTGAACCAGTTTGTCAAAGAACCGACCAGGCGCCAAGGAAACACACAACATATCTTGGATCTCGTACTTTCGAATAATAAAGACATCATCAGCGGAGTCAAAGTTATCGATGGTATAAGTGATCATGACATTGTTTTGTTCAACGTAAGAGCGTCCTGCCAGCGAAAGCGAAATGTTAAACGTAAAGTTTATATCAGGAAAAAGGCCGACTGCCAACGTATTAAGCAGGAGCTACAGTCATTAGCTGAGACCCAGGCCCCAGGTATAGGCGACGACTCTGTTGATGAGACGTGGAACTATTTCGACGACAACATCCGCCGTATAATGGATACCTGCATACCGCACAAGATGACAAGCTCAAGACACAACCTTCCCTGGTTTGATCGCTCCCTAAGAAGGCAGACAAGGGCCaaacaacggctatacaATAAAGCGAaaaaatcaggaaaccctgcgcactggagtgaataccgtgcagccagaaagcgtgtgcaaaagaatctgaaatccgctcgggaagtgtatatctctgattacctaggagatgcgatcgaggaaaacccaaagcgcttctggtcgtatatcaaacagctaaaaaatgacgatcctggagtagccgacttcaaaattgacagcaaaatagtaagtgacgggaaagcgaaatcggaactcctgagcaaacagttctctagcgtattcacagttgaatacctaactgacatccctgtcgcaggcagtgatccaaagccaggcattggcaaccttactgttacgattccgggcgtcatcaaacaactgcaatccttgaagcccaataaagctagcggaccggatgggatacctccgtggttcttgaaggagtatgcagcggaaattggccctatgttagcagctatttaccaaacctcagtagactctggtagggtaccatctaggtggaaacacgctaatgtatgcggcgtgtacaagaatggggggaaatcaaatcccgcaaactacagacccatttcacttacatgcattgcgtctaaagtcctcgaacatattattcacagtcacatgatgaaacatcttgaacgatactctatccttacggacgttcagcatggtttccgctcaaaacgttcaactgtaacgcaactgattctgaccattcatgatttggccaagaccatccaagataataagtctgtccatgctgctgtattagattttagtaaagcctttgataaggtcccacataagcgccttatcattaaactacagtactatggcatccgcgggcctctactcaactggttcgagtcattcttaacaaaccgttcccagacagtagtgtgcgatggcaaacactctgaccctgcgctagtgacatctggagtgccccaagggactgtgttgggcccattgctatttttactgtacgtgaatgacctaccagataacctgaagtcttctatcaggttattcgctgacgacgcgctgctgtatggcgttatctcaaatgaggatgatggtgaccaactccaggaggatctaaagcaacttgaagcatggcagaacacatggcaaatgtcatttaatccctcaaagtgtaagactatttgtatttctaccaaacgggacccaccccagaggaaatatgtcttctgcggagtcgaactggagcaagttgactcgatcccataccttggagttatcttaaacgacaacctgaaatggtcaaaccacgtccagagtaccaccagtaaggcgagcaaggtcctgggcatgacaaaacgaaacctttggaattgcccaaagcaagtcaaagaaactgtatacaccaccatagtgcgcccaaagttagaatatgccagttccgcttgggatccgtaccttcaaaaagacatcgattcacttgagagagtccagcggaaagcggcacgcttctgtgcaaacaactacaaaccaaccgccagtgtaactgagatgatcaaggacctagggtggaagactttagagtcacgaagaaccatggcaagactgaccctcctctacaaaatgagtcgaggagaaattgacattgatactaacttattcctccgtcccaatgcagaaagacgaacacgcgcgagccataattttagatttatacaatataaagcaactaagaacagttatttttattctttttttccaagaactattagacaatggaacaagctacctgctgatatagcagaatccgagtcaataacacagttccaatccaagctttcaaatttttttaaatag

Transcript

c0338.g001.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00628	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0007508	Biological Process	larval heart development	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0061343	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan