Gene detail

Detailed information of c0346.g016.t1 in Palythoa umbrosa

Genomic Location: c0346:172640...198618
NR annotation: XP_032229762.2, nucleolar RNA helicase 2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0346.g016.t1

ATGGCCTCAGACaagaaaaaaaagaaatcaaagagCAAAGAGAAAGTTTCAAAGAAAGAGAATGAAGCTgaaaagaagacaaaaagcaaaagaaaggagagaaagaggaagCACGATTCAAGTGATGATGAAAAATCTTTCAAAGTGAaaagaaagaaGGAAGAGAGTTCTGAGTCAGAAGATGACAACTCTGAACAAGAGTTGGATGAAAGAAGTGAAGTGGAGAAAGAAGGAGACTTTTCAAAGTTCAGGATCTCAAGAAAAACCGTTAAAAATTTGCAAGACAGAGGAATTAAGTATCTGTTTCCTATCCAAGCAAAGACATTTGATTACATTTATGATGGTGAAGATGTCATAGGACAAGCAAGAACTGGTACTGGAAAAACACTTTCTTTTGCTCTCCCCATTGCTGAGAGACTACAGAAATCCAAGTTAACACAGAACCGTGGTCGTCCACCAATGGTTCTTGTAATGGCTCCAACTAGAGAATTAGCGAAGCAGGTTAGCGATCAGTTTGAAGCCCTAAATAGTGGTTTATCCATGCATTGTATCTACGGTGGAGTGCCTTACGAACCACAAGAGAGTGCCATTAGGAGAGGTCTGGATGTTCTTATCGGAACTCCTGGCCGGATTTTAGATCATATGAATAAAGGAATGTTAAACTTAAGTGAACTGAGACATGTTATTCTCGATGAAGTGGACAGAATGTTGGATATGGGATTCAGTGAGTCTGTTGAAGAGATTCTGGCATCCTCattttctgaagATCAAGAAGAGAAGCCCCAGACCCTTTTGTTTTCTGCCACGTTACCCGAGTGGGTCAGGAAAACAGCCAAGAAATACATGAGAAAGGAAAGAAAGTTGGTTGACTTGATTGGGGACCAAAAACTGCGCACTGCTGTTACTGTACAGCACATGGCCATAAGATGTCAGTATTACTCGCGAGCTTCAACTATCGGAGATGTTGTACAAGTTTATTGTGGTGCCCACGGCAGAACTATGATATTTACACAGACAAAAAAGGAAGCAAATGAACTTGTTCTTAATTCCGTGTTGAAGCAGGAAACACAAGTACTTCATGGCGATATTCCCCAGAAACAGAGAGAAATTACCCTAAAGAGTTTCCGTGATGGCAAATTTCGTTGTCTTGTTGCCACAGATGTGGCCGCAAGAGGACTGGACATACCGGAAGTAGATCTGGTTGTACAATGTGAACCGCCGAAGGATGTGGAGTCGTACATTCATCGGGctggGAGGACTGGTCGAGCTGGGAGAGAAGGAATCTGTATTATATTCTACAAACCGACACAAGAATCCCTTCTTCAGTATGTGGAACGCAAAGCTGGAATCAAATTCAAACGGATTGGAGCACCCCAGCCGTCGGATATCATCAAAGCGTCAGCTGAAGACGCAGGACGATTTCTGGTCCAGGTTCCTGATTCAGTTTTACAGCACTTTCGTGAGGCGGCAGCTAAGTTGGTGGACAGTAAGGGGGCGTTGGATGCAGTGGCTGCTGCTCTCGCCCACATCTCCGGCACCACTGAAATCAAATCTCGATCCCTCCTCTCAGCACAAGAGGGTTTAACCACATATATAATGAGAACGGCCAACACAGAAGTTCGCGCAGTAGGTTACATGTGGAAGGTGATTGAAAACAACCTGCCCTCACAGGTGAAACCAGAAGTGCGCGGAATGAGAATTTGTAGTGACAAAATGAGTGTGGTTTTTGATTTACCCAGCAACATGGATGATCTAATCAAGGAATCCTGGATTGATAATCGCGGTATAACTCTTGAAAAGGCAACGGAATTACCGGAGCTGTTAGAGAGAAGTACCCCGGAATATGGAAATAGCAGAGGCTCCTTTTACGGTGGTCGAGATACGGGCGGAAGGGCCAAAACGTTTAACCACTCCAGATTCAGAGAGAGATATCACTCAGAAAGTCCCAGGCAATCCCCCTTTAATAACAGGTTTGGCGGTGATAGGTCTGGGTCCAAAGGATTTAAAGACAAACGAAATGGGAAATTTAGCCGAGACAGTTCGAACTGGAATAGAACAAAAGGCAAATCTAATAACGGATTTCAAACTCGTTATATGAAAACTTGA

Transcript

c0346.g016.t1

Protein

Uniprot

Uniprot term	Description
Q9NR30	Nucleolar RNA helicase 2 OS=Homo sapiens OX=9606 GN=DDX21 PE=1 SV=5
Q3B8Q1	Nucleolar RNA helicase 2 OS=Rattus norvegicus OX=10116 GN=Ddx21 PE=2 SV=1
Q9JIK5	Nucleolar RNA helicase 2 OS=Mus musculus OX=10090 GN=Ddx21 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08152	GUCT	GUCT (NUC152) domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR012562	Domain	GUCT	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16911	DDX21; ATP-dependent RNA helicase DDX21	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala