Gene detail

Detailed information of c0354.g006.t1 in Palythoa umbrosa

Genomic Location: c0354:118383...141759
NR annotation: XP_022798355.1, A disintegrin and metalloproteinase with thrombospondin motifs 3-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0354.g006.t1

ATGCATCTTAAGGTTAAGAGAAATCACGAGTTCATTACACCTGGTCTTGTTGTTGAAAAGCACACTGAAGATGGCTTTAAGACGGCACACGCACTTCCAAAAGCGTCTTATTTTACTGGCCGCGTTGCTTCGGACCCAAGCTCTTTGGTTGCCATAAGTAGCGATGATAGCGGATTGACCGGACTCATCAACACTAAGAATGAGGGGCTTTTTGTCCAACCTTTACCAGGCCATCTTGCTCGTCGCTACATGTCTAATGGTTTCGCAAAACCACATTTGATTCACCGGCGATCTGTTGAGAACATTCTCTATGAGTGTGGAGTAAAGAGTTCCCGCGTAAAGCGCAGCCTACTGGAACTGCGAAAAAGGCAGCTGAACAAGGCAAACGCCAAACGACTTTTTCCACTCAAGTACATGGAGCTTGGACTAATGGGCGACCAATACTTTGTGCAAAACGTAGGAGACGAGAAAGCCACCAAACTTCTCCTTTTGAACGCACACATTCTGAATGGCATGTTTCAAGATGAAAGCATTGGAGTATTCAAAGTCACCGTTGCGCTTGTCAAACTGATTTTAAAGAAAGATGGGCTTGGTTTTCCCATTGACGCCACCAATGGGTTGCGCCTTGAACGTCTAGGAAATTGGGTTAAGACAAACTTGCCTAAAAACGATTCGGATCCGCAACATCCCGACCttatgggactggttactagGTTTGGCATGAACCACGATAACAGTGTCAACCGGGAAGACTGTCCCAACGGTGTTAACATCATGTCCTCTGGTACACCTGGAGGAAGGGGAGCCTTGAAGTGGTCTCCCTGCAGCAAGGAGTGGTTCCAATCGTTTCTGAGTGATAACCAAAAATCACATTGCCTCAACGACAAACCGACCAGTTTAATAATTGTCCCGAAGAACTACACCGACAAGCTTCCTGGACAAATCATGGACGGAGATGAACAATGTAAGATCGTTTTCAGTAACCCCACATATTATCGATGTCCTCAGCGACTTGGCTATTGTGGAAGCTTGTACTGCACAAACAGTAGTGTGGCCTGTGTTAGTTACATCACCCCGCCTGCTGATGGCACGAGATGCGGCGAAAGACATTGGTGTATCAAAGGCGAGTGTGTGGATGATGGGTCACCTATAATCGACGGGGGATGGAGTGAGTGGTCCACTGAATTCAGCGAGTGCTCCAAAACGTGCGACTCAGGAGTGCAACATAAAACTAGAACTTGCACTGAGCCCCCACCACAGAATGGTGGGAAGCCATGTGAAGGAAAGGAAAAAGGACACTGGAGAATGTGCAATCCCCAGCCTTGCCACCGGAGAAAGCGTTCCATAGTTTCATACAGAGACGAACAATGTCAAGTGTTCGATCCAGATTTAACGGCCTATTTGGGCAGCTCAGACCGCTGTGCTCTAAACTGCAAGAAGGGGAACCATTGGTGGCCAAAAGGAATCGTTAAGGACGGAACTAAGTGTGTGGAGGATAAACGGGATGTTTGTATTGAGGATGTGTGTAGGCTTGTAGGATGTGACAACAAATTAGAATCCGGGTTGAAGACGGATCGCTGTGGTGTCTGTGGTGGCGATAGTACTTCCTGCAACAAAGTCAAAGGATTTTACGCTAAACCTGAGTTCAATGGATGGGGGGCTGGAAGTCCTGATACAATCGTTCAAATTCCTGTCGGTGCAGTAAATGTTATCGCACAAAAGAGGGCAGCAGACTGGGGGAATATCGGACTACAAAAACTGGACGGTTCCTGGGTGTATTCTATTCCATCAGGGACGAACGTATATAAAGTAGCGGGCACTACTGTGAAGTACACACACGAGACCAACATGTACGCCGACAGGCTTTTCATTGAAGGACCTACAACAGAAGGTCTAAAGCTTATGTATGTTAAATACTACGAAAGCAAAGGAGTTGACTACGAGTGGTTTAGCAACGGCAAGGCTGAAATCTCACCTAGCGATGTGCAGTGGAAAACATCCAGCTGGACTGCTTGTTCAGTGACCTGTGCCGGGGGGACCCAAACCAGAACAGTTCAGTGTGAACGAAACGACGACAACAGCTGGGTTCACGACAGAATCTGTCTCCAGAGCGAAGCAAAGCCGGCAATGAAACAAAATTGTAACACCAAGTCTTGCCCGCCAGAGTGGTTTACGTCCGATTGGCGACCATGCTCCAAAACGTGTGGTAAAGGAACCCAGACTCGTGTCATCAACTGTCGACAAAAGATCGGTCCAGGAAAGTACCAGACATTAAACGATTCCGAATGTGGAGGAAACAAACCAACAGGAGATCTTGTTCAAGAGTGTAACAAGTTGGATTGCCCCTCGGAATGGGTCTCTTCCAAATGGTCACAATGCTCATCAACCTGTAAAGGCGGCGTATGGACACGAAGCGTCGTTTGCAAGCGGTTGAACGAACTGGGAGAACACGTTGAAGTTGCCGAAATTAACTGCAAACACAAAGTGAAGCCGCTACTCGAGGAGAGCTGTAATGATGACGTCAGCTGCCCGATGAGTATAGCGTCAGGAAAGGAGTTTGTCCCGCTAGGATGCTTCAAAGACGCCGGCAAATCCGCATTACCGGTAGCTGTCGTTAACCTCAGACTGAAGCCCATTGACTGGAGCGACATGTCAAAAACAGTGAAAGAGTGCGCAGAGGAGGTTCACAAAAAGTATCCCGGCCACAAAGTGTTTGGCATTCAGTATTATGGTGAATGTCTAACCAGTCCAAGAGACGACACTTACAACATAAATGGCGCGTCAACCAACTGTTGGTCCGGAGTGGGCGGTGAATACACGGATTTCTCGTACAAGTTTAAAGATTAA

Transcript

c0354.g006.t1

Protein

Uniprot

Uniprot term	Description
Q1EHB3	A disintegrin and metalloproteinase with thrombospondin motifs 7 OS=Rattus norvegicus OX=10116 GN=Adamts7 PE=1 SV=1
Q811B3	A disintegrin and metalloproteinase with thrombospondin motifs 12 OS=Mus musculus OX=10090 GN=Adamts12 PE=2 SV=2
P58397	A disintegrin and metalloproteinase with thrombospondin motifs 12 OS=Homo sapiens OX=9606 GN=ADAMTS12 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01421	Reprolysin	Reprolysin (M12B) family zinc metalloprotease	Domain	Interproscan
PF19030	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF17771	ADAMTS_CR_2	ADAMTS cysteine-rich domain 2	Domain	Interproscan
PF19236	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001590	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR050439	Family	ADAMTS and ADAMTS-like	Interproscan
IPR041645	Domain	ADAMTS, cysteine-rich domain 2	Interproscan
IPR006586	Domain	ADAM, cysteine-rich domain	Interproscan
IPR013273	Family	ADAMTS/ADAMTS-like	Interproscan
IPR045371	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08621	ADAMTS6; a disintegrin and metalloproteinase with thrombospondin motifs 6	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala