Gene detail

Detailed information of c0368.g006.t1 in Palythoa umbrosa

Genomic Location: c0368:85417...121252
NR annotation: XP_031570762.1, nuclear pore complex protein Nup160-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0368.g006.t1

ATGGAGGATGTTATTGGTGGTTATAGAGAAATTTTACTTCATTCGCAGTTTTACGAAGGAAAAACTATCGATTTTACACTAGAAACAGAAGATTTTACAACGATAAAAGATGAAGAATACGTGAAATCACAAAGCGGTGGAGGATACGCTTATCGGGATAGCGGCAAAGTTGGATCGGTGACAAGAAATCGATTTATTTACTGGAAAATCACCGAAGATGCTCTGGAGTTGACAGAAATTTCCCTTGATGCCAATCTCAGTGGCAATAACCTGAAGATTTGTTTCCCTGGTGCCATTCTGTTACCTGGTGTATCTGTTTTTGAAACACATTCTAATGTGTGTGTTTTGATTGCAACAACAAACAGTGTTCATCGGCTGACACTGCCACATCCTGAACGATTGCACAGACATAGTTTTTCATCTGCTTCAtcatcTTCTGAGATCAGTCTGCCATCCATTTTCACTGGTGCTTCCAGTATAGAGTTGAGAGAGCCATGTAATTTTGCAACATTCAGCCATTTGTGTAAAAGTTTTGCAGGTTGGCTGTGTCAAGATGGTCATTGTTTGTTTGCATTAGCAACTGTTGCTGGGAGTATTCTGTTGGTTAAACTGCCTCCTTCATCTTCACAAGAACAAGCTGAACAGTTTGAATTGAAGCAATCCAGCGTGATGCAGCGAATTTGGTCAGGTCTTGTTCCTGCAAGCCTAAGAGGCGATGGTCAGTCTGCTGATGCAGCTCTCAAAGTCAGTCTACATCCAGTTGATAAGAACATGTGTGTGTTTGCACTGTGCAGGGACCACAAGTTGAGAGTATGGTCTTGCCAGAATCAAGAGTGCATTCTTGTCAAGGATATTCTTGAAGATGTTCCAGATGATATTGATGTTCAGGGTGTTTCAGCACAAAATCATTGTTTACATCAAACTGTGGACTCGACAACAGGGAGACTGTATATTGGGGTGTTTCTCAGCTTTCCATATCACACACAGTTCTGTGTGTATGAAGCTATCAGTTCCCATAATGTACCAATTAGCTTGTCGCAAGTCTCTTTCATGTTTGCACCAATGGGTAACCTTGTGGATTTTGCGTTGACACCATCACACTTGTGGAGTCTGTGGACAAGCAGTGAGGGAGAGACAACTTTGCAGTACATTGCCATTGAAGGAGGCCTAACTGATGGTCAAGAGTGGAACCGTGCTTATTTGCAACCATCAGAAAGTAATGCTGTCTCTATTCCAGCAGATAAGGAGCCTAGGGAAGTTTACTTGGATCAGATCTTTTCACCTGGGAAGTTCTCAAACTACTCCATCATCAAAGCAATTCAGATCTACCAACATTCATATCAAGCTAAGCCAGACTTGCAGTTTACTGTTTCTCTTTCTAGACAGGAACTCAAAGAACAAGTTATCAACCTAATTGACTGCGAGATCCAACAGTCGGCTCCAGATTATGAAATGTTTTATGATGATTACTACGATCTGCAGCTGAGATGTTGGTCAAAGTTTTATTCGTATGTGATGCAATACCATGAAGTCGGGTGCAAACCAATGGGTCTGTTTCTAGATTACCACTCAGGCCTTGTGTGTCTTCTACGAAAGGAAACAGTCTCACTTTTGAGACCTTGTGATGCCATTGAGAACCTTTGTCTGTCAACTGGTGAAGTGTACAATAACATATGGGCTTCAGAACCATTCTTGCTTGAAGATAAACAGTTGATGAGTAACTTATCCATCCTTGGAAATACACTTAAGCTTGTGTCACGACAGCTGTCAGCAGACAGTCTTGCTGCACTGGAGAATGATCTCAAGTTCAAATGTAATCCAGCATTAACAGTCAAGCAGATTGCAGTGGCACTATTGGCTAATGTGAGTGATGATGACCAACAGTTTGTTGAGCCTCAACCAGATTCAGCATTTGAAAGAGAAATCGAAAGTTTGTTGAAAGTAAAGAATCTTTTAgagtgttttgaagtgctttTGAACTCAATGGATCTGAAGGAATGGCTTCCAGACGATGTAGAAAGAGAGCTCCCAGTTGAGGGAACAGGTTTTGATGCCGCCCATCAGCTGAGCTGTCAACAGTTATTTAGCAGCAAGTTGGCATCCTCTGTTTTATTGTTCTCCATTCGTCATGTGGTTGAAAGCCGGTTGGAACTTTGTCGGGACCTTCTTGTGTTGTTGAGTCTAATGGAAAGACTCGGTGCACAGATGGGACTTGATCCAAAGGATCTTCATGTTGTGAAAACCAAGTACATCCCAAGAACAGTAGCGTTGTTGAGGATTTTCTACAGTCTCCATTGGATTGCAGAACAGCGAGTCACATCTGCTCCTGCTAATGCTGTAGAGTCAAACCTAAAGCAGTTGGCCGCTCTGGAGATCACTGATGGCTTACAAGCAAGACAGATTCATGAAAAACCGCAGATGCTGTTGTTGGAACTGTTTCTGTCTGGCGTGGGTGGCACTCAACTTAGACGAAACTTGGCACTTACAAACAAAGTAGCACTGGAGATGGTACACAGTACGTGGTGCCCATGTTGGTCTGctctactcaaccaaaccATTTACACACTAGCACACCTTCTCTGGCCAGCCAGGAGCAGTGCGCTTTTCCCCGAATTTCTGGTGTCGAATTTCCAGTGCAGACAGCTACAAGAATACAGCCGTTTGTTGTTGGAGTATGATTTTCACGGATGCCCAGGTTCTTGGTATTTTCTCCTTGGCAAGTCGTACCTGGTGCTTGGAGAACACGGAAAAGCTTTGGAGTGTTTCTTAAGAGCAGCCAAAGGAGTTGGAATTGAGGATTCTCTAATGAAGAAACTCCTTCAAGAAGATGAAGATGACCGATCTAAACTAATCGTTCTATACTATGTAAAGGTTATGAGATTATTTGAGCAGTTTGAGTCACCAGATTATGTGCTCTCTGTAGCAAAGACAGCAGTCAGTGCCGCTGACCCATCGGATCCAAAGCTTTCGATTTTGTGGTCCAACATCTTCAAGCATCATCTGGAACTGGGACACAACGACGACGCTTACTCAGCACTAACTTCGAATCCAGATCCTTCCAGACGAAGAGACTGCCTTCATCGTTTTATGGTTGCATTGTGCGAACGTGGACAACTTCAGGAACTCTGTGAATATCCATACACCAACCTACACGATGAGTTTGTGAATATTATGGAGTCTCATGCCAGAACAGTAGATATTGCAACACACAACTACTACGACCTTCTTTATGCATTCCATGTGTTTCGTGGTAACTTTAGAAAGGCTGCAAGCGCCATGTATGAATACGGGATGAGGCTTGGTCAGGAACTACCAGGATTGGTTGGACTGCAAAAACAGGCAAAGTGCTACCTTGCTGCAATGAACTCTCTGCGCTTGGTTGAGCGAGAAAATGCTTGGATAGTGAAACCGCTGGACAGGGAACAAGCCACTAAGTCTGGGGAAGCACCAGATATGTCCCCAAAGCGGAAGAAAGGCGGCGAAGACATTTGGTTTATGACCAATAGGCGCCATTCTCGACGAAAAGTGACCGTGCTGGAAATCGGGGACATGGAACGAGAATATCTTCTTGTTCTTGCCAGACTCCAGTTGTTGAAGGTGGACGCTGACCCATCACAGGCGACAGGGCCATCGCTTTCTGCTGAGGAGACGCTTGCACTTCTCATCCAGGCTGGTTTATTTGACACAGCCTTCACTATCTCCTCGACGTTCAAGCTACCTAAAGAAAGCATACTTGAAGGATTGGTATCGAGGTGCGTGAAACAGTCGTACCAAAGTGCGGGACTGATCAGGCAAAGTTCTGTAGTTATTGGAGAGGAATCGTGGGAGTGGATTCTTGCTAACGACACGAACAGCATCCAGTTTACCAAAGACAGCAGTGTTGCGGATCAGGCATGGCAACTATTGAAGTACTACCTTGATCGACTGGAGTCACGTGACGGACAGGCCTACCATCGTTGCGTGGCGCGAAAACTTCTTTCATTGGGTGCACAGCTGCCCGTTTGGCTTGTTCACTCATACAAGAGATCAAATGCACCGGAATTGCTGCAGCTGTATGTAGATTACGACATGTTGTGTGAGGCAGCCATCTTAGCTATGGAGTTTATTGACGCAGTACTTGGAAGTGGGAAAGAGTATTTCGGAGTTAAGAATGCACTACACTTCACCAGTCCAAGCGTCTGGCTGCCTTACACAACAATTGATCATTTGCTCTTGGCTCTGGGAGAAGCAGCGGCTGATACAGATCTCGCAAAGGTTCGAGATGAAGTGGAACAAAAAATTGAGCGTTACCACGAGCATGTTGAGCGTGTGTCAAAAGATATTACTGAGGCAGCATGGAAACGAGCTCAACGAAaaaaaaaaTTAGAGGGCTTTCAGTACGAGCCCTCCTCCCAGTCGGCCACGTCACGTGATTAA

Transcript

c0368.g006.t1

Protein

Uniprot

Uniprot term	Description
Q9Z0W3	Nuclear pore complex protein Nup160 OS=Mus musculus OX=10090 GN=Nup160 PE=1 SV=2
Q12769	Nuclear pore complex protein Nup160 OS=Homo sapiens OX=9606 GN=NUP160 PE=1 SV=3
Q9VKJ3	Nuclear pore complex protein Nup160 homolog OS=Drosophila melanogaster OX=7227 GN=Nup160 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11715	Nup160	Nucleoporin Nup120/160	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021717	Family	Nucleoporin Nup120/160	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21286	NUCLEAR PORE COMPLEX PROTEIN NUP160	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14303	NUP160, NUP120; nuclear pore complex protein Nup160	-	Chromosome and associated proteins	ko03036	deepkoala