Gene detail

Detailed information of c0381.g014.t1 in Palythoa umbrosa

Genomic Location: c0381:191983...222892
NR annotation: CAH3123831.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0381.g014.t1

ATGAGCAACTTATCAAATGCAAAGAGTCCCTGTCCAGTTGAACCTACATACGACATTCAGGCAGGCGGAATATGGGATTGCGTTGTGCTGACATGtgagaacttggattggcagcatGAGAAGTTGGATTTCCTGAAGGAGCCAATCAACAAAGCTGCTGCAATTGACTCAGCAGTTGGTAAGGAAACATTACTGTTCCCAGTTGAATGCACAGCTCCGCAGTCTGTGGTCTATGCACCAACTGGACCTGTCAATCGGGACTATGATGATGTGCGCCGTTATTATGATGCCGCTATGAGTGGATTGAAAAGAGCTGTGAAGTCGGGCAGCAAGACCCCAGTGGTAGTTGTTCCCCCAGGACATACATTTGACAATGCTAGAATGGTTGCTGTCCTTGGTGCTATGCAGGAGTTGTATGTGCCAGTGGAAGTACGCGAAGCTTTGCCTGACCAGAAGCAAAAAGTCAGCAAACTTGGAGTGTGGATCGAAGACAAGAGCGAGGAAAGGGATGTGCGATTTACCAAAGCTGTTGAGGCTGGAAGGTATGTGGCCCGAGATATTGGTGGTTCTGATCCGGAGCGAATGGCCGCACCTCGGGTGGTAGAGTATGTTGAGAGCATTTTCAAGAACACCTCTGTGAAGGTGAAGGTTACATCAAAACTGAAAACCCTTGAAGATGAATACCCGTTGTTAGCGGCAGTCAATCGTTGTGCAAGTGTGGTAAAGAGACACCAAGCACGTGTTATTGATCTGGAGTATGTCGGGAGTGGAGAAATCGAGCAGACGCTTCTTTTGGTTGGAAAGGGTGTGACATATGATACTGGTGGAGCTGATATCAAAGCTGGTGGTATAATGGCTGGCATGCACAGGGACAAGTGTGGAGCCGCTGCAGTTGCCGGATTCTTTCAGACTCTTGCCAAACTGCAGCCTGCAGGAATCAAAGTTTTGGGAACAATGGCGATGGTACGGAACAGTGTTGGGGCAGAATGTTACGTTGCTGATGAGCTGATCCAGTCAGCTGCTGGAGTGAGAATCAGAGTTGGCAACACTGATGCTGAAGGTCGAATGGCAATGGCGGATCCACTCAACTACATGCGTCTCAGGGCATTGCAAGAGAAGAATCCTCACCTGATGACGATTGCAACTCTCACTGGTCATTCTATCAGGGCAGTTGGGCCAAATTACACTTGTGTGATGGACAACGGACCAGCCAGACTTGTCTCCTATGCACAGAAAATACAAGAAGTTGGGCACAACATGGCTGACCCATTTGAACTCTCAACAATCCGCAGAGAGGACTATGACTTCATCAAGGGGAAGTCTATTTATGAGGATGTGCTGCAGTGTAACAACCAAGCCTCCAGCAGCACCCCACGTGGACACCAGTTCCCTGCAGCTTTTCTCATTACAGCTTCTGGGCTGAGCAAGGTGCTGTATACCTTGTACGAACATGCCGCGGGTTACGCAGTGTTTAAAGTGGTTGGCAAGGAAGAAATTGGTGTCCTTTTACCAGAAGTCCAAGAATCGGTTGAGGATCTTGCACGATTTGGAAAATTAGTCAAGCTGCTTGCATTTGCGCCGTTCAAATCTGGTGCTAATGCACTGGATAATATAAACTGCATTTCAGAAGGTGTTGTTCATGATGATCTTAAAGTGTTCCTTGAAGCCAATATACCAACAGGTAAAAAGAAATCGAAGGTGACCCTCGGAGTCAGTGACCCAAAGCTTGGTGCTGCAATTTTGGAATCACTTGAAATCTATTGTGAGTCTGGTGGAATTATGCTAGAGATACTTCGCGGCATTCGCAGGCATTTCATGAAAATGATCAAAGGGTTGACTGGAGAAATGGCGGCCAAGGCGCAGCTAGGCCTTGGGCATAGTTACTCTCGTGCTAAAGTTAAGTTCAATGTTCACAGAGTTGATAACATGATCATCCAGTCTATCAGCTTGTTGGACCAACTGGATAAAGATATAAACACTTTCTCCATGAGAATAAGAGAGTGGTACTCGTATCATTTCCCAGAGCTGATAAAGATTGTCAGTGACAATTACATGTATGCAAAAGTGGCCAAGTATATTAAGTCAAGAAAAGATTTCACAGAGGAAAAACTTGAGGGCTTGGAGGAGATTGTTATGGATGAAGCCAAAGCTAAGGCCATTCATGATGCATTGAAGTCTTCCATGGgAATGGACATTTCGCCATTGGACTTAATCAACAtcgagagttttgcctctcGAGTGATTGGCCTCTCAGAATATCGCAAATCTCTACATAGCTACCTTGTCTCCAAAATGCATCAAGTGGCGCCCAATTTATCAGTTTTGATTGGGGAACAGGTTGGAGCCAGACTAATTTCACATGCTGGGAGTCTGACAAACTTAGCCAAGTATCCTGCCTCTACAGTGCAGATTCTTGGAGCAGAAAAAGCTTTATTCAGGGCACTAAAGAAAAAGGGGAACACTCCCAAATATGGTCTTATCTTCCACTCTTCATTCATTGGTCGGGCAGGATTGAAAAACAAAGGAAGGATTTCACGCTATCTTGCCAACAAATGCTCCATTGCCTCAAGGATTGATTGCTTTTCAGAAATTCCAACATCCATTTTTGGCAGCAAACTGCATGATCAAGTGGAGGATCGATTAAAATTCTACGAAACTGGCGAAGCACCAAGGAAGAACATAGATGTGATGAAGGAAGCCATGAGTGAAGTTCTGCaggagaaagaggaggtaacgacagagaagaagaagaaaaagaaaaagaaagataagaaaaaggagaagACTTTGACTGATGAGGATACAGCCGATGTGAAGATGGATGAAAATGGAAACGAAGCTGAGACACCTaaaaagaaaaagaaaaaAGACAAGAAGAAATCAACAGTTGAGGATGAAAGTGCTCATGAAGAGTCTGTGGTCTTAAatggtcatgatgaagctactgaagGaaagaaaaagaagaagaagagaaaactggaggagcaggaagaaAGTGTTACAGAGGAATCGGAAgctgctactcctaaaaagaaaaagaagaagaagaaaagagaagaaAGTGATTAG

Transcript

c0381.g014.t1

Protein

Uniprot

Uniprot term	Description
Q95K50	Nucleolar protein 56 OS=Macaca fascicularis OX=9541 GN=NOP56 PE=2 SV=1
Q3SZ63	Nucleolar protein 56 OS=Bos taurus OX=9913 GN=NOP56 PE=2 SV=1
Q9D6Z1	Nucleolar protein 56 OS=Mus musculus OX=10090 GN=Nop56 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08156	NOP5NT	NOP5NT (NUC127) domain	Domain	Interproscan
PF00883	Peptidase_M17	Cytosol aminopeptidase family, catalytic domain	Domain	Interproscan
PF01798	Nop	snoRNA binding domain, fibrillarin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042239	Homologous_superfamily	Nop, C-terminal domain	Interproscan
IPR002687	Domain	Nop domain	Interproscan
IPR012974	Domain	Nucleolar protein 58/56, N-terminal	Interproscan
IPR045056	Family	Nucleolar protein Nop56/Nop58	Interproscan
IPR000819	Domain	Peptidase M17, leucyl aminopeptidase, C-terminal	Interproscan
IPR011356	Family	Peptidase M17, leucine aminopeptidase/peptidase B	Interproscan
IPR036070	Homologous_superfamily	Nop domain superfamily	Interproscan
IPR012976	Domain	NOSIC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10894	NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030515	Molecular Function	snoRNA binding	Interproscan
GO:0031428	Cellular Component	box C/D methylation guide snoRNP complex	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0019538	Biological Process	protein metabolic process	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14564	NOP56; nucleolar protein 56	-	Ribosome biogenesis	ko03009	deepkoala