Gene detail

Detailed information of c0399.g013.t1 in Palythoa umbrosa

Genomic Location: c0399:166871...175870
NR annotation: XP_031572695.1, uncharacterized protein LOC116306742 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

c0399.g013.t1

ATGGAGGATGAAGCGGCGATGCGAGGGTTGTGTTGTGCCGTGTGTTACAACTCTTTCAAGGCGACAGACGAAGATTTGATTCCTAGAGTGCTAAAATGTGGGCATACTTACTGCTCAGGTTGCCTAAGACAAATCGCTGCCCAGCGCCATAATTATTCCATTTGCTGCCCCACTTGTAAGTCGGATACCCCATTATTATCCTGTTATGGAAGCATCACAACTCTGCCCAAGAATTTTGGTTTGTTGGAAGTCCTTGAAGTTCAGGGGGGTCAAACCATTGATGTGAAGAGGCAGCCAAAAAGCAAGTATGTCTGCCCAGAACATGATGAGCCAATGAAGGTTTACTGTCACACAGACAACTGCTTAGTGTGCATCTACTGCCAGGTGTATGGAGCTCACAAAGGACATAATTGTGAACTTGCCAGTAACTTGGCCGAGAGCGCCCTCAAATACTTGCAGAGTATAGGAAAAAATCTTGGAGAGTACCATGGTCAGCTGCTCGAAGCAAGGAAAAGAATTACTCAAAGGAAGCAAAATATACTTGACAAACAGAATGAGGTCGAAACAAAAATAATGAAACACTTTCGACACTTGCGTTCAGCTGTTGCTAGAATGGAAAACACAATTAAAAGTTCTCTGGAATCAATGACAAAAGAAAAATTGGCGCAAGTTGACAAACAAGCACAATCCCTGACAGATGTTATCAAAAAATGTGAACAGGTTTACTTTAATATACAAGCAGTTGAGGCGAAGGGTGATAGTGCGATCCTGCAGGAGCACTGTGATATGAAAGACCTATTAAACAGTATTGCTGCTGTGGTTGGTCAGTGTGAACTGAAACCACAAGTAAAAAACAACCTTGTATACAGCATCAACCACAATCTAATATATGAGCTTGACCATGCTGGAGAAGTAATCGAAGATCCAGAATATAGTGAAGCCCAAGACCAGAATGATGATGTGGTAACAAACAGTCAGCATCTGCTGACTCAACTTCGAGAGACCCTGGAACAGATTGCATCGCAAGAGGGAGTGACATTGGTGTCAACGCCAAAACACACTGAGGGTGGTGGACAGAAAGCTAGTGTAGATAGAACATCAACCTCAGCTCCACCCACCATGGTAACTACAATGTCACCAGACAGGCACTTTTCATTGATCCAAGCTGATAACTACAGTTTACCAAGTACAGCCCAAGCGATGTTGCCTCAGGATGATATGAGTGGATCTTCGCTTTGTGCCACTCTGTCTGACTTTGTCCCTCCTGAAAATGAGATAACCGAGCCTACAGTTAGTGTTGACGTCGAGGAAAGAgcggatggagaaatcagggaggaagaagagaatgagaatgatgaagtggtggtcgaagAGGAGGTgagtgctgaaAGCgaggAGAGGgatgaagatgaggatgatgaggtGGTAGACGGAGCTATTGGAGGGCAGGATAGTCCCAGTGGTACTTTTACCACTCATATTaccaacaaccaacaACAAGCACAAGAGGTTGACGACCAGAGGTTGCTGCGTGAATTACAGAAGGAGATCAAAAACTTAAAGCTTCTTAGAGCCATAGGGGAGCCTGTGCGAGTTGTGGAGAACATCTCAACACCTTCTAAAGAAGAGAATACCGCAGAATCATCTGGCTCAAGTGACGATGAAAGACACAGCCTCCAGCTCGACTTTCAAATCAGAGTTAACAACGACTTCTCTCGTTCTAGGCCCCAGGCCTCTCTTAACTCACCCAAGCTTCTCACGACATATGCGCGGCGTGGGCAACGGTCACAGTGCTCTGTGACAAACTGTCAGTTTCATGCCAAGGCGAGTCTGCAGTGCCGCTGCTGCGGTCGTTTGTTTTGTAAGGAGTGTGCGCCAAATTCAACTAATTGCAACAAGAACGAGAATGGCCATTGGTTCGTTAGTTATAAAGCAGTGAACTTGAGGGCCGATTGCAGAAACCCTAAAAACTCTAATCAAAAAGACAACCAGGACGAAAAAAAGATTCGGAGATCTTGCAGGGAAAACCTTGAAAGCAACGTTGGGCATGCTCCAATAGTTGCGACCTGTGACCCAGTTGCAGTCAGTCCGTGGCAGTGCAAGCGGTGTACGATGGTTAACCGCGCTGAAGCTCTGGTGTGTGAGGCGTGTGAAACCAGTCGAGACTTTGATCCGCAGGAAGAAAGAGCAGTATGTCCAATGTGCACTCTTGTCAATGAACCGGGAAAAAGAAAATGCGAACTGTGCGAAACTGATCTTCATGTTCCAAACTGTGAGCGGGTcttagactcagactCAGATTAA

Transcript

c0399.g013.t1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR052667	Family	E3 ubiquitin-protein ligase RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47156	PROTEIN CBG20824	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan