Gene detail

Detailed information of c0425.g001.t1 in Palythoa umbrosa

Genomic Location: c0425:25953...26954
NR annotation: XP_027058360.1, transcription factor Sox-3-like [Pocillopora damicornis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q5FWM3	Transcription factor Sox-3-B OS=Xenopus laevis OX=8355 GN=sox3-b PE=2 SV=1
Q2Z1R2	Transcription factor Sox-1b OS=Danio rerio OX=7955 GN=sox1b PE=2 SV=1
Q68FA4	Transcription factor Sox-3 OS=Xenopus tropicalis OX=8364 GN=sox3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12336	SOXp	SOX transcription factor	Family	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR022097	Family	Transcription factor SOX	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16796	SOX2; transcription factor SOX2 (SOX group B)	-	Transcription factors	ko03000	deepkoala