Gene detail

Detailed information of c0434.g017.t2.p1 in Palythoa mizigama

Genomic Location: not available for this species
NR annotation: XP_029203816.2, tyrosyl-DNA phosphodiesterase 2-like [Acropora millepora]
Species abbreviation PMIZI · all data for this species · gene families

Sequence

No sequence record for c0434.g017.t2.p1 in PMIZI (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05C16	Leucine-rich repeat-containing protein 63 OS=Homo sapiens OX=9606 GN=LRRC63 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005668 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051547 all species →	Family	Tyrosyl-DNA phosphodiesterase 2-like	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15822 all species →	TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0016605 all species →	Cellular Component	PML body	Interproscan
GO:0070260 all species →	Molecular Function	5'-tyrosyl-DNA phosphodiesterase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for c0434.g017.t2.p1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.